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Np add fasta files to buildind docs#1791

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nikellepetrillo merged 12 commits intodevelopfrom
np_add_ref_files_to_buildind_docs
Mar 2, 2026
Merged

Np add fasta files to buildind docs#1791
nikellepetrillo merged 12 commits intodevelopfrom
np_add_ref_files_to_buildind_docs

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Description

Give your PR a concise yet descriptive title.
Please explain the changes you made here.
Explain the motivation for making this change. What existing problem does the pull request solve?
Mention any issues fixed, addressed, or otherwise related to this pull request, including issue numbers or hard links for issues in other repos.
You can delete these instructions once you have written your PR description.


Checklist

If you can answer "yes" to the following items, please add a checkmark next to the appropriate checklist item(s) and notify our WARP team by tagging @broadinstitute/warp-admins in a comment on this PR.

  • Did you add inputs, outputs, or tasks to a workflow?
  • Did you modify, delete or move: file paths, file names, input names, output names, or task names?
  • If you made a changelog update, did you update the pipeline version number?

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Remember to squash merge!

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🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
IlluminaGenotypingArray.wdl has not had its version updated
Some WDLs or changelog files need updating. See output for details.
validation_failed

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🔍Changelog Validation Results:

Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
IlluminaGenotypingArray.changelog.md has not been changed and needs to be updated
Some changelog files need updating. See output for details.
validation_failed

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Remember to squash merge!

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🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

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🔍Changelog Validation Results:

basename: missing operand
Try 'basename --help' for more information.
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

Comment thread website/docs/Pipelines/BuildIndices_Pipeline/README.md Outdated
Comment thread website/docs/Pipelines/BuildIndices_Pipeline/README.md Outdated
Comment thread website/docs/Pipelines/BuildIndices_Pipeline/README.md Outdated
nikellepetrillo and others added 2 commits March 2, 2026 09:56
Co-authored-by: Elizabeth Kiernan <55763654+ekiernan@users.noreply.github.com>
Co-authored-by: Elizabeth Kiernan <55763654+ekiernan@users.noreply.github.com>
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github-actions bot commented Mar 2, 2026

Remember to squash merge!

1 similar comment
@github-actions
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github-actions bot commented Mar 2, 2026

Remember to squash merge!

@github-actions
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github-actions bot commented Mar 2, 2026

🔍Changelog Validation Results:

basename: missing operand
Try 'basename --help' for more information.
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

Co-authored-by: Jessica Way <jway@broadinstitute.org>
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github-actions bot commented Mar 2, 2026

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions
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github-actions bot commented Mar 2, 2026

🔍Changelog Validation Results:

basename: missing operand
Try 'basename --help' for more information.
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions
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Copy Markdown

github-actions bot commented Mar 2, 2026

Remember to squash merge!

@github-actions
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github-actions bot commented Mar 2, 2026

Remember to squash merge!

@github-actions
Copy link
Copy Markdown

github-actions bot commented Mar 2, 2026

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions
Copy link
Copy Markdown

github-actions bot commented Mar 2, 2026

🔍Changelog Validation Results:

basename: missing operand
Try 'basename --help' for more information.
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@github-actions
Copy link
Copy Markdown

github-actions bot commented Mar 2, 2026

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

1 similar comment
@github-actions
Copy link
Copy Markdown

github-actions bot commented Mar 2, 2026

🔍Version Validation Results:

Comparing versions and changelogs for pipelines that differ from the versions on 'origin/staging':
All WDLs and changelog files appear to be valid for this release.

@github-actions
Copy link
Copy Markdown

github-actions bot commented Mar 2, 2026

🔍Changelog Validation Results:

basename: missing operand
Try 'basename --help' for more information.
Comparing changelogs for pipelines that differ from the versions on 'origin/develop':
All changelog files are valid for this release.

@nikellepetrillo nikellepetrillo merged commit 5da742b into develop Mar 2, 2026
11 checks passed
@nikellepetrillo nikellepetrillo deleted the np_add_ref_files_to_buildind_docs branch March 2, 2026 20:39
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3 participants