Np chunk atac bams - #1933

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nikellepetrillo wants to merge 18 commits into

np_chunk_atac_bams

Commits on Aug 25, 2026

pass through chunked bams
nikellepetrillo
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4194e0f
change multiome inputs
nikellepetrillo
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01b4d0b
path for samtools
nikellepetrillo
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41d570e
fix snapatac calls
nikellepetrillo
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86e80b2
sort barcodes
nikellepetrillo
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d29cfe1

Commits on Aug 28, 2026

add a close
nikellepetrillo
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2fa6648
Updated pipeline_versions.txt with all pipeline version information
actions-user
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2ffad32

Commits on Aug 31, 2026

add chunk up the bam task
nikellepetrillo
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2740f7c
Merge remote-tracking branch 'origin/np_chunk_atac_bams' into np_chunk_atac_bams
nikellepetrillo
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458b1f1
add chunk up the bam task
nikellepetrillo
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9cacbf7

Commits on Sep 1, 2026

fix samtools path
nikellepetrillo
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a302da4
fix samtools path
nikellepetrillo
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0235e42
go back to python task
nikellepetrillo
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b368985
check for nondeterminism in chunking step
nikellepetrillo
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02ee9e5

Commits on Sep 4, 2026

Commits on Sep 11, 2026

dont anchor automatically
nikellepetrillo
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bd91779
dont anchor automatically
nikellepetrillo
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072c052