WholeGenomeReprocessing_v2.3.4

2.3.4

2021-02-22

• Added SORTING_COLLECTION_SIZE_RATIO as an optional task input to MarkDuplicates

WholeGenomeGermlineSingleSample_v2.3.2

2.3.2

2021-02-22

• Added SORTING_COLLECTION_SIZE_RATIO as an optional task input to MarkDuplicates

Optimus_v4.2.3

4.2.3

2021-02-23 (Date of Last Commit)

• Made changes to emptydrops tool wrappper script to not fail in cases with small number of cells, instead, create empty drop result files with NAs.
• Updated the docker in RunEmptyDrops.wdl task to 0.1.4 Updated emptyDropsWrapper.R in the docker

ExternalWholeGenomeReprocessing_v1.3.4

1.3.4

2021-02-22

• Added SORTING_COLLECTION_SIZE_RATIO as an optional task input to MarkDuplicates

ExternalExomeReprocessing_v2.4.4

2.4.4

2021-02-22

• Added SORTING_COLLECTION_SIZE_RATIO as an optional task input to MarkDuplicates

ExomeReprocessing_v2.4.4

2.4.4

2021-02-22

• Added SORTING_COLLECTION_SIZE_RATIO as an optional task input to MarkDuplicates

ExomeGermlineSingleSample_v2.4.2

2.4.2

2021-02-22

• Added SORTING_COLLECTION_SIZE_RATIO as an optional task input to MarkDuplicates

CEMBA_v1.1.1

1.1.1

2021-03-03 (Date of Last Commit)

• Fixed the CEMBA.idx

WholeGenomeReprocessing_v2.3.3

2.3.3

2021-02-08

• Calculate java memory value from the optional memory input value for CramToUnmappedBams java tasks

ExternalWholeGenomeReprocessing_v1.3.3

1.3.3

2021-02-08

• Calculate java memory value from the optional memory input value for CramToUnmappedBams java tasks