ExomeGermlineSingleSample_v2.4.5

2.4.5

2021-06-22

• Removed duplicate MarkDuplicatesSpark task from BamProcessing
• Removed duplicate Docker image from CheckPreValidation task in QC

Arrays_v2.3.5

2.3.5

2021-07-29

• Updated documentation to describe changes to inputs and outputs

WholeGenomeReprocessing_v2.3.6

2.3.6

2021-06-01

• Removed deprecated parameter PAIRED_RUN from MergeBamAlignment

WholeGenomeGermlineSingleSample_v2.3.4

2.3.4

2021-06-01

• Removed deprecated parameter PAIRED_RUN from MergeBamAlignment

SmartSeq2SingleSample_v5.1.2

5.1.2

2020-05-24 (Date of Last Commit)

• Updated the LoomUtils.wdl and Picard.wdl. The changes are made for smartseq2 single nuclei and multisample smartseq2 single nuclie pipelines, but does not impact SmartSeq2 single sample pipeline

SmartSeq2SingleNucleus_v1.0.0

1.0.0

2021-04-21 (Date of Last Commit)

• Initial release of the SmartSeq2SingleNucleus pipeline

Optimus_v4.2.5

4.2.5

2021-05-24 (Date of Last Commit)

• Updated Picard task to support single nucleus SS2. Changes do not affect Optimus
• We also updated STAR to 2.7.9a

MultiSampleSmartSeq2_v2.2.2

2.2.2

2020-05-24 (Date of Last Commit)

• Added a task to Picard.wdl
• Updated the docker in LoomUtils.wdl task to 0.0.7.

MultiSampleSmartSeq2SingleNucleus_v1.0.0

1.0.0

2021-05-17 (Date of First Commit)

• This is the first release of the Smart-seq2 Multi-Sample Single Nuclei workflow

ExternalWholeGenomeReprocessing_v1.3.6

1.3.6

2021-06-01

• Removed deprecated parameter PAIRED_RUN from MergeBamAlignment