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SoloTE v1.02 -- 10/26/2022

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@bvaldebenitom bvaldebenitom released this 26 Oct 18:36
· 23 commits to main since this release
1.02
a48eb4b
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Changes in behaviour
Modified command line arguments. Now each argument is as follows:

  1. BAM file
  2. Threads
  3. Output directory
  4. TE annotation in BED format
  5. Output prefix

In order to run SoloTE, the command should be provided in this way:
python SoloTE_pipeline.py BAMfile Threads OutputDir TEannotationBEDfile OutputPrefix

Bug fixes

  • Issues #2, #3: fixed the issue that caused SoloTE to crash when using BAM files that have the GN:- tag for not genic reads.
  • Fixed an issue related to paths created during SoloTE execution.
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