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Update MySQL environment variables in .env and docker-compose.yml #50

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Closes #49

Improved docker-compose.yml

This PR significantly improves the configuration management by:

  1. Moving hardcoded values from docker-compose.yml cbioportal-database to the .env file
  2. Ensuring compatibility with all existing initialization scripts

These changes make the deployment more maintainable and user-friendly by centralizing all configuration in one well-documented file, while keeping the actual implementation in docker-compose.yml unchanged.

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Remove MYSQL Hard-Coded Credentials
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