WIP - docs: remove MySQL references for ClickHouse-only rfc100

.claude/settings.local.json

@@ -0,0 +1,7 @@
+{
+  "permissions": {
+    "allow": [
+      "Bash(python3 -c \"import json; d=json.load\\(open\\('public-live.json'\\)\\); print\\(d[0]\\)\")"
+    ]
+  }
+}

end-to-end-test/local/runtime-config/portal.properties

@@ -2,19 +2,13 @@
 app.name=cbioportal
 
 # database
-spring.datasource.mysql.url=jdbc:clickhouse:https://mllw215wcr.us-east-2.aws.clickhouse.cloud:8443/cbioportal
-spring.datasource.mysql.username=readonly_user
-spring.datasource.mysql.password=S@omepassw0rd
-spring.datasource.mysql.driver-class-name=com.clickhouse.jdbc.ClickHouseDriver
 spring.datasource.clickhouse.url=jdbc:clickhouse:https://mllw215wcr.us-east-2.aws.clickhouse.cloud:8443/cbioportal
 spring.datasource.clickhouse.username=readonly_user
 spring.datasource.clickhouse.password=S@omepassw0rd
 spring.datasource.clickhouse.driver-class-name=com.clickhouse.jdbc.ClickHouseDriver
 spring.datasource.url=jdbc:clickhouse:https://mllw215wcr.us-east-2.aws.clickhouse.cloud:8443/cbioportal
 spring.datasource.username=readonly_user
 spring.datasource.password=S@omepassw0rd
-spring.datasource.driver-class-name=com.mysql.jdbc.Driver
-spring.jpa.database-platform=org.hibernate.dialect.MySQL5InnoDBDialect
 
 # clickhouse mode
 clickhouse_mode=true

scripts/e2e.sh

@@ -13,9 +13,6 @@ CLICKHOUSE="true"
 RUN_FRONTEND="false" # Set to "true" if you want to build and run frontend at localhost:3000
 RUN_TESTS="false" # Set to "true" if you want to run all e2e:local tests
 
-# Use database image with preloaded studies
-export DOCKER_IMAGE_MYSQL=cbioportal/mysql:8.0-database-test
-
 # Use custom application properties
 export APPLICATION_PROPERTIES_PATH=$APPLICATION_PROPERTIES_PATH
 

src/pages/staticPages/visualize/Visualize.tsx

@@ -86,7 +86,7 @@ export default class Visualize extends React.Component<{}, {}> {
                     <li>
                         Please note that, installing a local version requires
                         system administration skills, for example, installing
-                        and configuring Tomcat and MySQL. With limited
+                        the required software stack. With limited
                         resources, we cannot provide technical support on system
                         administration.
                     </li>