Add mutation domain classes and use cases#11650

Draft

i-am-leslie wants to merge 42 commits intocBioPortal:masterfrom

i-am-leslie:master-clean-arch-mutation

Commits on Aug 14, 2025

Commits on Aug 17, 2025

Fixed some parameters for the datamapper to control information from the database
i-am-leslie
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Refractored the mapper class method to handle each projection with its seperate method
i-am-leslie
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Commits on Aug 24, 2025

Rough SQL for SUMMARY projection note, need to crosscheck
i-am-leslie
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Commits on Aug 26, 2025

Refactored repository layer to use molecularProfileCaseIdentifierUtil for grouping profiles and removing duplicates
i-am-leslie
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Commits on Aug 30, 2025

Updates
i-am-leslie
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Commits on Sep 1, 2025

Commits on Sep 2, 2025

Finished up summary and detailed projection wroks now
i-am-leslie
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Commits on Sep 3, 2025

Commits on Sep 4, 2025

Refactored code to make use of projectionType
i-am-leslie
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Commits on Sep 5, 2025

Trying to adjust the queries to make use of clickhouse strengths
i-am-leslie
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Commits on Sep 6, 2025

put more comments for description
i-am-leslie
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Commits on Sep 13, 2025

Trying to optimize the query for clickhouse by batch sending the whole information to clickhouse for faster processing and reducing the risk of doing redundant joins
i-am-leslie
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Commits on Sep 18, 2025

Fixed the query to work for just molecularProfileId is provided
i-am-leslie
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Commits on Sep 28, 2025

Commits on Sep 30, 2025

Added condition to filter out null in mutation columns
i-am-leslie
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Commits on Oct 1, 2025

Tried controlling the result of the cartesian product
i-am-leslie
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Commits on Oct 2, 2025

Commits on Oct 4, 2025

working on the e2e test
i-am-leslie
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Commits on Oct 5, 2025

e2e test complete awaiting review
i-am-leslie
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Commits on Oct 7, 2025

Added comments
i-am-leslie
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