June Public Release

[Rima-Waleed]

#	Study_ID	Testing Instance Link	Sample Count
1	hdcn_msk_2025	https://private.cbioportal.mskcc.org/study/summary?id=hdcn_msk_2025	1,270 Samples
2	rectal_radiation_msk_2024	https://private.cbioportal.mskcc.org/study/summary?id=rectal_radiation_msk_2024	48 Samples
3	pancan_metaprism_2023	https://private.cbioportal.mskcc.org/study/summary?id=pancan_metaprism_2023	1,031 Samples
4	ucec_msk_dacruzpaula_2025	https://private.cbioportal.mskcc.org/study/summary?id=ucec_msk_dacruzpaula_2025	11 Samples
5	gist_msk_2025	https://private.cbioportal.mskcc.org/study/summary?id=gist_msk_2025	183 Samples
	Total Samples		2,543 Samples

Notes:

Study_ID	Missing Data	Notes
Hdcn_msk_2025	Missing clinical data	Pending author response
gist_msk_2025	Missing clinical data	Pending author response
Ucec_msk_dacruzpaula_2025	Missing clinical data	Author preparing data

**Data still pending author response and clarification for submitted review comments

[Rima-Waleed]

** Curation team review in this PR: #2288

[schultzn]

hdcn_msk_2025:

• structural variants is showing as a data type for only 29 samples - should be for all samples (the 29 samples listed have at least one SV identified)
• not a lot of clinical data is included. Why are we releasing a cBioPortal cohort if we are not really adding value beyond what is in GENIE or the 50k paper?

pancan_metaprism_2023:

• custom driver annotation appears to be incomplete and redundant with OncoKB / Civic annotation already in the portal. Remove?

ucec_msk_dacruzpaula_2025:

• Is this data set useful? It's only 11 patients...

gist_msk_2025:

• why are mutations showing up in every sample, even when there is no read support?