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Add optogenetic stimulation only for LED programs - #56
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Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Fixes #55
Details (AI-generated)
Seiler2024OptogeneticInterface.add_to_nwbfileadds theOptogeneticSeriesonly for the 14 programs used in the opto experiments that switch on the LED (ON ^STIMinMSNs/*.MPC). Sessions on other programs keep the device and stimulus site with no series, as the probe sessions already did (Shock Probes and Omission Probes from the Opto Experiments Should have empty OptogeneticStimulus #38). This replaces the probe-program list and the assert onProbe Test Habit Training TTL.Sessions whose stimulation times are empty, from rewards or from
Z, now return before adding anything, which removes the 8 zero-power placeholder series.tests/test_optogenetic_programs.pycovers a non-stimulation program, a STIM program and a scrambled program with emptyZ(pytest tests: 3 passed; 2 fail onmain).An audit notebook kept outside the repo (
opto_programs.ipynb) finds the 166 non-stimulation and 8 zero-power series in 000971 and reconverts those sessions: none has a series now. Five sampled stimulation sessions have series identical to the published files.🤖 Generated with Claude Code