deepbiop-v0.1.16

Other

• updated the following local packages: deepbiop-utils, deepbiop-fq, deepbiop-bam

deepbiop-utils-v0.1.16

Added

• (cli) add query length option and percentile calculations to CountFx
• add dataset module and integrate with Python bindings

Other

• update MSRV to 1.90.0 and add bon dependency
• Feat (#68)
• update Minimum Supported Rust Version (MSRV) to 1.85.1 in workflow and README
• Feat (#57)

deepbiop-fq-v0.1.16

Added

• add dataset module and integrate with Python bindings

Other

• ⬆️ chore(deps): upgrade PyO3 to 0.27.1 and fix compatibility issues
• ⚡️ perf(cli): implement streaming for fxs2one to reduce memory footprint
• update MSRV to 1.90.0 and add bon dependency
• Feat (#68)
• update Minimum Supported Rust Version (MSRV) to 1.85.1 in workflow and README
• (deps) update dependencies in Cargo.toml and add dataset.rs file
• Feat (#57)

deepbiop-fa-v0.1.16

Added

• Add random selection functionality for FASTQ records and expose it to Python
• Add functions to combine multiple FASTA and FASTQ files into bgzip-compressed formats
• Add fas2one and fqs2one commands for batch file conversion

Other

• ♻️ Optimize record selection in select_record_from_fq_by_random function using for loop
• ♻️ Refactor select_record_from_fq_by_random function to use reservoir sampling algorithm
• Update fetch_records method to use fastq reader and improve record handling

deepbiop-core-v0.1.16

Added

• Add k-mer generation functions and related utilities with comprehensive documentation
• Integrate deepbiop-core library and refactor module imports across crates
• Introduce deepbiop-core library and refactor encoder options across modules
• Add diagram image and SVG file
• Add CLI installation guide
• Update MSRV to 1.75.0
• Add support for processing BAM format in DeepBiop
• Add initial project files and configurations

Fixed

• Update Minimum Supported Rust Version to 1.83.0
• Update Minimum Supported Rust Version to 1.82.0
• Update badge URL for deepbiop crate

Other

• Remove redundant keyword from Cargo.toml
• Update function names and improve compression handling in BAM to FASTQ conversion
• add docs
• Update comment to reflect correct sub-module registration in Python integration
• Add documentation for default values
• Update MSRV version in README and improve formatting
• Remove outdated documentation badge
• Add documentation badge to README.md
• Update badges in README.md to use consistent format
• Update README.md setup instructions
• Update README.md formatting
• Add tests for bam and fq modules
• Initial commit

deepbiop-cli-v0.1.16

Other

• updated the following local packages: deepbiop-utils, deepbiop-fq, deepbiop-bam

deepbiop-bam-v0.1.16

Other

• updated the following local packages: deepbiop-utils, deepbiop-fq

deepbiop-v0.1.15

Added

• Add support for parsing FASTA files and functions

Other

• Update pre-commit hooks to use pre-commit stage

deepbiop-utils-v0.1.15

Added

• Enhance compression handling with new functions and improved documentation for file type detection

Other

• Update function names and improve compression handling in BAM to FASTQ conversion
• add docs

deepbiop-fq-v0.1.15

Added

• Add random selection functionality for FASTQ records and expose it to Python
• Enhance ExtractFq command to support random selection of reads and update Cargo.toml dependencies
• Add functions to combine multiple FASTA and FASTQ files into bgzip-compressed formats
• Add fas2one and fqs2one commands for batch file conversion

Other

• ♻️ Optimize record selection in select_record_from_fq_by_random function using for loop
• ♻️ Refactor select_record_from_fq_by_random function to use reservoir sampling algorithm
• Update fetch_records method to use fastq reader and improve record handling