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Upgrade Python 3.9 (EOL)

Status: Open.

#28 In cbg-ethz/cojac;

· gordonkoehn opened on Nov 12, 2025

Change branch for Github Actions Updater to <code>dev</code>

Status: Open.

#25 In cbg-ethz/cojac;

· gordonkoehn opened on Sep 9, 2025

Nanopore amplicon data and long reads

Status: Open.

#18 In cbg-ethz/cojac;

· hoelzer opened on May 9, 2025

sig_generate: <code>listfilteredmutations</code> should raise error if API query fails

Status: Open.

#15 In cbg-ethz/cojac;

· gordonkoehn opened on Apr 17, 2025

updated yamls files

Status: Open.

#14 In cbg-ethz/cojac;

· carlottaolivero opened on Feb 2, 2023

blank cooc.test.json file

Status: Open.

#13 In cbg-ethz/cojac;

· carlottaolivero opened on Jan 11, 2023

Paired end 150?

Status: Open.

#12 In cbg-ethz/cojac;

· rafischulman opened on Oct 18, 2022

cooc-curate TypeError: 'NoneType' object is not iterable

Status: Open.

#11 In cbg-ethz/cojac;

· PlushZ opened on Aug 16, 2022

TypeError: unsupported operand type(s) for -: 'NoneType' and 'int'

Status: Open.

#10 In cbg-ethz/cojac;

· evantroendle opened on Aug 4, 2022

yaml module not found

Status: Open.

#9 In cbg-ethz/cojac;

· suskraem opened on Feb 17, 2022

issue with overlapping amplicons

Status: Open.

#7 In cbg-ethz/cojac;

· hudenise2 opened on Oct 29, 2021

Issue with MutationOccurrenceVisualization notebook

Status: Open.

#6 In cbg-ethz/cojac;

· Albaburi opened on Jun 9, 2021