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v1.1.0

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@gordonkoehn gordonkoehn released this 11 Jul 13:38
· 65 commits to main since this release
v1.1.0
5cacd67

What's Changed

This PR upgrades sr2silo to v1.1.0 by overhauling the metadata interface, centralizing sample selection via timeline.yaml, and integrating dynamic reference fetching and authentication improvements.

  • Replace hardcoded SAMPLE_BATCH_IDS with dynamic filtering from timeline.yaml
  • Fetch nucleotide/amino acid references from LAPIS at runtime and simplify metadata handling
  • Update submission to use LoculusClient with CLI-based authentication and add SBATCH templating scripts

Full Changelog: v1.0.1...v1.1.0

Contributors

gordonkoehn
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