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Upgrading to SILO 0.8.0 format

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@gordonkoehn gordonkoehn released this 04 Aug 14:32
· 62 commits to main since this release
v1.2.0
b8dd31e

This release upgrades sr2silo to support SILO input format version 0.8.0, implementing a new JSON schema structure that flattens metadata fields to the root level and restructures genomic segments with explicit sequence, insertions, and offset fields.

Key changes:

  • Migrated from nested JSON structure to flat schema with root-level metadata
  • Replaced padded alignments with offset-based positioning for better efficiency
  • Updated schema validation to distinguish between nucleotide and amino acid segments
  • Leading to a major bump in version sr2silo v1.2.0

Full Changelog: v1.0.1...v1.2.0

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