Bump actions/checkout from 4 to 5 #44
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extendend the uniprot functionality using other api endpoints, still …
This one is on me. I forgot to change branches
… chunking (and nothing else) tested on couple of papers
… it generates a more consistent list of outputs.
…ould like to run blast locally
…context, i wish they were always there but were null
…ame methods into rangeslist and rangesdict, I wanted to include 2 separate things simple ranges object and a genomic ranges object that uses ranges under the hood
…d to test and come up with methods for genome class
…ere are a few more that we need to add and create some sort of a common dictionary or documnet common linkert between the databses so we can search different databases w/o human input or searching through dicts, added a few things to requirements.txt
…we can have gtf attributes stored when methods are called
oops
…ed intact to its own class
…mation, this might not be feasible
…still need a way to figure out how to independently search w/o user prompt all the other apis given one
…s to sequence list later
Some fixes in readme and installation instructions, we are getting ready to promoting this to other people.
…can wait, there is a detailed notebook already.
…olecules, there is a design conflict here between the structure module and the molecule. I'm thinking about using the structure module to have ligand bound states in the molecule class instances
…ll be working on integrating that to the project metaclass
Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 5. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v4...v5) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: '5' dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]>
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Bumps actions/checkout from 4 to 5.
Release notes
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Changelog
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08c6903Prepare v5.0.0 release (#2238)9f26565Update actions checkout to use node 24 (#2226)Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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