Mathematical models of gene regulatory networks involved the seed dormancy to germination transition.
seed_code.m is a MATLAB script that creates Figures 4-9 in "Red light and the dormancy-germination decision in Arabidopsis seeds" (currently in revision at the Bulletin of Mathematical Biology).
Published version: https://link.springer.com/article/10.1007/s11538-020-00849-1
Errata: https://link.springer.com/article/10.1007/s11538-021-00894-4
seed_nd.ode can be used with XPP AUTO version 6.10 to create Figures 2,3, & 10 in the same paper.