Add 3 functions to simulate genotypes/allele counts for quick protyping #281
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Hello @hardingnj! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found: There are currently no PEP 8 issues detected in this Pull Request. Cheers! 🍻 Comment last updated at 2019-11-05 15:34:04 UTC |
alimanfoo
reviewed
Jul 26, 2019
allel/simulate/simulate.py
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| return GenotypeDaskArray(g) | ||
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| def simulate_allele_counts_array(n_variants, n_samples, p=(0.95, 0.05), ploidy=2): |
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| def simulate_allele_counts_array(n_variants, n_samples, p=(0.95, 0.05), ploidy=2): | |
| def simulate_genotype_allele_counts(n_variants, n_samples, p=(0.95, 0.05), ploidy=2): |
allel/simulate/simulate.py
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| def simulate_genotypes(n_variants, n_samples, p=(0.95, 0.05), ploidy=2): | ||
| """generate genotypes from a random distribution |
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Suggest capitalize and full stop like regular sentence, also for parameters.
hardingnj
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Revisited after a hiatus, apologies for that. Ready for review. |
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Three simple functions that return
daskobjects.Unsure how to generalise to return in-memory objects if required.