Adding a fecundity-survival trade-off to a discrete population model with maturation delay

Authors

Christopher J. Greyson-Gaito^*1, Sabrina H. Streipert², Gail S.K. Wolkowicz¹

Affiliations

*Corresponding Author - christopher@greyson-gaito.com

1. Department of Mathematics and Statistics, McMaster University, Hamilton, ON, Canada
2. Department of Mathematics, University of Pittsburgh, Pittsburgh, PA, USA

ORCID

• CJGG – 0000-0001-8716-0290
• SHS – 0000-0002-5380-8818
• GSKW – 0000-0002-4501-2342

Julia and XPPAUT scripts and datasets

Folder and file structure

• data – empty folder for data files to be placed (created in TradeOffs_figurecreation.jl)
• figs – empty folder for figures to be placed (created in TradeOffs_figurecreation.jl)
• src
  • julia
    • packages.jl – list of packages required (file used in other scripts)
    • TradeOffs_CommonCode.jl – julia script file containing common code used in other scripts
    • TradeOffs_figurecreation.jl – julia script to produce the figures in the manuscript
  • xppaut
    • RickerConstanttau1_bifdiagram.ode – xppaut script to produce bifurcation diagram for RickerConstant model (with tau=1)
    • RickerConstanttau1.dat – data output from RickerConstanttau1_bifdiagram.ode
    • RickerConstanttau2_bifdiagram.ode – xppaut script to produce bifurcation diagram for RickerConstant model (with tau=2)
    • RickerConstanttau2.dat – data output from RickerConstanttau2_bifdiagram.ode
    • RickerConstanttau3_bifdiagram.ode – xppaut script to produce bifurcation diagram for RickerConstant model (with tau=3)
    • RickerConstanttau3.dat – data output from RickerConstanttau3_bifdiagram.ode
    • RickerConstanttau4_bifdiagram.ode – xppaut script to produce bifurcation diagram for RickerConstant model (with tau=4)
    • RickerConstanttau4.dat – data output from RickerConstanttau4_bifdiagram.ode
    • RickerConstanttau5_bifdiagram.ode – xppaut script to produce bifurcation diagram for RickerConstant model (with tau=5)
    • RickerConstanttau5.dat – data output from RickerConstanttau5_bifdiagram.ode
    • RickerConstanttau6_bifdiagram.ode – xppaut script to produce bifurcation diagram for RickerConstant model (with tau=6)
    • RickerConstanttau6.dat – data output from RickerConstanttau6_bifdiagram.ode
    • RickerConstanttau8_bifdiagram.ode – xppaut script to produce bifurcation diagram for RickerConstant model (with tau=8)
    • RickerConstanttau8.dat – data output from RickerConstanttau8_bifdiagram.ode
    • RickerRickertau1_bifdiagram.ode – xppaut script to produce bifurcation diagram for the RickerRicker model (with tau=1)
    • RickerRickertau1_C.dat – data output from RickerRickertau1_bifdiagram.ode
    • RickerRickertau1_beta_b.dat – data output from RickerRickertau1_bifdiagram.ode
    • RickerRickertau2_bifdiagram.ode – xppaut script to produce bifurcation diagram for the RickerRicker model (with tau=2)
    • RickerRickertau2_C.dat – data output from RickerRickertau2_bifdiagram.ode
    • RickerRickertau2_beta_b.dat – data output from RickerRickertau2_bifdiagram.ode
    • RickerRickertau3_bifdiagram.ode – xppaut script to produce bifurcation diagram for the RickerRicker model (with tau=3)
    • RickerRickertau3_C.dat – data output from RickerRickertau3_bifdiagram.ode
    • RickerRickertau3_beta_b.dat – data output from RickerRickertau3_bifdiagram.ode
    • RickerRickertau4_bifdiagram.ode – xppaut script to produce bifurcation diagram for the RickerRicker model (with tau=4)
    • RickerRickertau4_C.dat – data output from RickerRickertau4_bifdiagram.ode
    • RickerRickertau4_beta_b.dat – data output from RickerRickertau4_bifdiagram.ode
    • RickerRickertau5_bifdiagram.ode – xppaut script to produce bifurcation diagram for the RickerRicker model (with tau=5)
    • RickerRickertau5_C.dat – data output from RickerRickertau5_bifdiagram.ode
    • RickerRickertau5_beta_b.dat – data output from RickerRickertau5_bifdiagram.ode
    • RickerRickertau9_bifdiagram.ode – xppaut script to produce bifurcation diagram for the RickerRicker model (with tau=9)
    • RickerRickertau9_C.dat – data output from RickerRickertau9_bifdiagram.ode
    • RickerRickertau9_beta_b.dat – data output from RickerRickertau9_bifdiagram.ode
• .gitignore – file containing files and folders that git should ignore
• LICENSE.txt – CC by 4.0 License for this repository
• README.md – this file
• Manifest.toml – Record of state of packages in the julia environment
• Project.toml – Gives julia package dependencies