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Template support#300

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wukevin merged 38 commits intomainfrom
kevin/templates
Feb 12, 2025
Merged

Template support#300
wukevin merged 38 commits intomainfrom
kevin/templates

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@wukevin wukevin commented Feb 8, 2025

Description

Support for templates. Templates expects a single .m8 file containing template hits for all protein chains in a complex. This .m8 file should have entries that are named according to either the entity names (as specified in the fasta file input), or based on the hash of the query sequence.

We also support querying the colabfold server for templates automatically.

Note that we do not perform any filtering on templates before feeding the templates into inference.

Motivation

Support templates in chai-1 inference.

Test plan

Tested locally.

@wukevin wukevin merged commit c3a2d15 into main Feb 12, 2025
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@wukevin wukevin deleted the kevin/templates branch February 12, 2025 23:35
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2 participants