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api/python/cellxgene_census
tools/cellxgene_census_builder
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lines changed Original file line number Diff line number Diff line change @@ -31,6 +31,8 @@ dependencies= [
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# NOTE: the tiledbsoma version must be >= to the version used in the Census builder, to
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# ensure that the assets are readable (tiledbsoma supports backward compatible reading).
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# Make sure this version does not fall behind the builder's tiledbsoma version.
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+ # TODO (spatial): tiledbsoma pin to a PyPI release is temporarily commented out in favor git commit pin
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+ # "tiledbsoma==1.11.4",
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# TODO (spatial): Pin tiledbsoma dependency to an actual released version after tiledbsoma spatial code has been released
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" tiledbsoma @ git+https://github.com/single-cell-data/TileDB-SOMA.git@fc5f8e7#egg=tiledbsoma&subdirectory=apis/python/" ,
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" anndata" ,
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# recent cellxgene-census _readers_ are able to read the results of a Census build (writer).
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# The compatibility matrix is defined here:
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# https://github.com/TileDB-Inc/TileDB/blob/dev/format_spec/FORMAT_SPEC.md
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+ # TODO (spatial): tiledbsoma pin to a PyPI release is temporarily commented out in favor git commit pin
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+ # "tiledbsoma==1.9.3",
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# TODO (spatial): Pin tiledbsoma dependency to an actual released version after tiledbsoma spatial code has been released
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" tiledbsoma @ git+https://github.com/single-cell-data/TileDB-SOMA.git@fc5f8e7#egg=tiledbsoma&subdirectory=apis/python/" ,
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# TODO (spatial): Uncomment line below to install "cellxgene-census" at an appropriate version when tiledbsoma spatial code has been released
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