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Census Spatial must be updated to support new Visium versions

5.3Next minor CELLxGENE schema version after 5.2Next minor CELLxGENE schema version after 5.2

Status: Open.

#1364 In chanzuckerberg/cellxgene-census;

· brianraymor opened on Mar 3, 2025

Census Spatial 2025 Q1

epic

tech

Status: Open.

#1360 In chanzuckerberg/cellxgene-census;

· brianraymor opened on Feb 21, 2025

API equivalence across spatial and single cell

spatial

user request

Status: Open.

#1359 In chanzuckerberg/cellxgene-census;

· ivirshup opened on Feb 21, 2025

is the published geneformer for census 2024-07-01 fine-tuned

bugSomething isn't workingSomething isn't working

Status: Open.

#1355 In chanzuckerberg/cellxgene-census;

· vtrifonov-altos opened on Feb 12, 2025

ExperimentDataPipe workers don't seem to share memory

bugSomething isn't workingSomething isn't working

Status: Open.

#1353 In chanzuckerberg/cellxgene-census;

· yanwu2014 opened on Feb 10, 2025

Add cell culture data to Census

user request

Status: Open.

#1341 In chanzuckerberg/cellxgene-census;

· pablo-gar-insitro opened on Jan 22, 2025

[FEATURE REQUEST] Add flag overwrite to download_source_h5ad

user request

Status: Open.

#1324 In chanzuckerberg/cellxgene-census;

· canergen opened on Dec 22, 2024

Specify the Census search space with an obs_value_filter parameter in find_nearest_obs

P0Priority 0 - Critical, fix ASAP!Priority 0 - Critical, fix ASAP!

Priority backlog items

user request

Status: Open.

#1305 In chanzuckerberg/cellxgene-census;

· pablo-gar opened on Oct 23, 2024

Social previews for the docsite

documentationImprovements or additions to documentationImprovements or additions to documentation

python apiRelated to the APIRelated to the API

user request

Status: Open.

#1295 In chanzuckerberg/cellxgene-census;

· ivirshup opened on Oct 2, 2024

[R] Remove tiledb dependency for R package

r api

tech

Status: Open.

#1274 In chanzuckerberg/cellxgene-census;

· ivirshup opened on Sep 5, 2024

Network Issue FAQs

documentationImprovements or additions to documentationImprovements or additions to documentation

network

P1Priority 1 - Improvement with wide impact, fix within 1 weekPriority 1 - Improvement with wide impact, fix within 1 week

Status: Open.

#1265 In chanzuckerberg/cellxgene-census;

· cathystoli opened on Aug 19, 2024

Stop blocking Boroni collection

bugSomething isn't workingSomething isn't working

dataRelated to the data in censusRelated to the data in census

dpData PlatformData Platform

P0Priority 0 - Critical, fix ASAP!Priority 0 - Critical, fix ASAP!

Status: Open.

#1263 In chanzuckerberg/cellxgene-census;

· ivirshup opened on Aug 15, 2024