feat: Fetch logs of enqueue_runs.py script #171
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Note: this script has been helpful to Utz and definitely to me when we had to ingest data, definitely worthwhile to merge |
* Refactoring method name * Refactoring unavailable ts placeholder * Updating name
* Adding deposition support for annotations * Updating test schema * Setting method link field to json * fixing tests
* Adding deposition tables * Adding timestamps to tables * Adding timestamps to s3 * Adding dir prefixes * Refactoring method name * Refactoring unavailable ts placeholder * Updating name * Revert timestamp addition for now * minor refactor * fix revert permissions * Updating all entities to use deposition * Updating existing tests * Adding tests for depositions * Updting seed sql files * Updating the comments text * Fixing broken seed sql * Update documentation * Adding deposition relationship to graphql
This reverts commit 1fadf51.
* Updating Jensen configs to include deposition metadata * Clean up * Updating exception message
* Add migration commands to modify comments * Comment out relationship comments * Attempt to add relationship comments * Format * Address PR comments * Remove relationship comments * Add may change to ID descrioption
* Port over cryoet-portal s3 data validation scripts created by @uermel * remove some of utz validation scripts from pr * make annotation tests separate * fix pytest * fix pytest again * fix pytest for real * delete yarn.lock * refactor s3 data validation data.py * more s3 data validation refactoring * merge refactor fixes from s3-data-validation-annotations
jgadling
changed the title
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Creates a script that can retrieve log files of all jobs scheduled in an enqueue_runs.py run. Modifies enqueue_runs.py slightly to make this possible.