fix colima instructions

Author: rzlim08

RunningCZIDWorkflowsOnARMMacs.md

@@ -7,7 +7,7 @@ The following is how to set up a virtual machine using `colima` where you can bu
 
 ### Install Colima
 
-`brew install colima`
+`brew install qemu colima`
 
 Go to the czid-workflows repo
 
@@ -28,7 +28,7 @@ SSH into the VM
 
 In the VM run:
 
-`sudo apk add py3-virtualenv gcc python3-dev musl-dev linux-headers make`
+`sudo apt-get update &&  sudo apt install python3-virtualenv gcc python3-dev musl-dev make qemu-user-static`
 
 Go to where the `czid-workflows` repo is mounted
 
@@ -37,3 +37,18 @@ Go to where the `czid-workflows` repo is mounted
 Then you should be able to build and run the docker containers as normal
 
 `make build WORKFLOW=minimap2`
+
+or 
+
+`make pull WORKFLOW=consensus-genome`
+
+Then try running an environment with: 
+
+```
+virtualenv -p python3 .venv
+source .venv/bin/activate
+
+pip install -r requirements-dev.txt
+sudo ./.venv/bin/miniwdl  run workflows/consensus-genome/run.wdl docker_image_id=czid-consensus-genome fastqs_0=workflows/consensus-genome/test/sample_sars-cov-2_paired_r1.fastq.gz fastqs_1=workflows/consensus-genome/test/sample_sars-cov-2_paired_r2.fastq.gz technology=Illumina sample="test" ref_fasta=s3://czid-public-references/consensus-genome/MN908947.3.fa -i workflows/consensus-genome/test/local_test.yml -v
+
+```