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fix: ATAC optimization part 2#1219

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kaloster merged 9 commits into
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kaloster/optimization-part-2
Jun 4, 2025
Merged

fix: ATAC optimization part 2#1219
kaloster merged 9 commits into
mainfrom
kaloster/optimization-part-2

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@kaloster

@kaloster kaloster commented Jun 2, 2025

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This is part 2 of this optimization PR

  • Update typo in example dataset name
  • Added cache per static object
  • Coverage endpoint can now be queried for multiple cell_types
  • Added FE updates to accommodate the revised endpoint
atac/coverage?gene_name=MYC&genome_version=hg38&cell_types=endothelial cell, leukocyte

and will return something like:

{
  "chromosome": "chr1",
  "coverageByCellType": {
    "endothelial cell": [[0.0, 1000000.0, 1000500.0], ...],
    "leukocyte": [[0.1, 1000000.0, 1000500.0], ...]
  },
  "geneInfo": [...]
}

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