v0.2.6

v0.2.6: Really avoid removing reference calls when using sort-vcf on …

v0.2.5

v0.2.5: support for GRCh38 and better variant sorting

- Do not remove reference calls or do any chromosome renaming when sorting
  by position with `variant-utils sort-vcf`.
- Add support for GRCh38 by avoiding issues with large numbers of contigs.
- Add ability to only fix sample name in input VCF without doing a full prep.

v0.2.4

v0.2.4: De-prioritize multi-allele calls where PL and AD values do no…

v0.2.3

v0.2.3: roll out latest fixes and update to biojava4

0.2.3-SNAPSHOT-20150115

Ensure passed in sample names get treated as strings when parsed from…

v0.2.2

Ensemble calling: correctly handle inputs with same base filename in …

v0.2.1

v0.2.1: Avoid normalization as part of ensemble process, which can ca…

v0.2.0

v0.2.0: Avoid putting fully specified indels into structural variant …

v0.1.9

v0.1.9: Fix issues dealing with complex input samples. Handle inputs …

v0.1.8

v0.1.8: Prevent swapped headers/samples during prep in cases where mu…