Fix lignetwork docs

[cbouy]

Fixes:

• API docs for lignetwork not appearing since the refactor in separate files
• copy-paste MDA converter new inferrer param from tutorials into Molecule
• typos

[github-actions]

Type-checking report

No changes in type-hints coverage 🎉

Overview

.
├── prolif
│   ├── [x] __init__.py
│   ├── [x] _version.py
│   ├── [x] datafiles.py
│   ├── [x] exceptions.py
│   ├── [x] fingerprint.py
│   ├── [x] ifp.py
│   ├── interactions
│   │   ├── [x] __init__.py
│   │   ├── [x] base.py
│   │   ├── [x] constants.py
│   │   ├── [x] interactions.py
│   │   ├── [x] utils.py
│   │   └── [x] water_bridge.py
│   ├── io
│   │   ├── [x] __init__.py
│   │   ├── [x] cif.py
│   │   ├── [x] constants.py
│   │   ├── [x] molecule_standardizer.py
│   │   ├── [x] template_engine.py
│   │   └── [x] xml.py
│   ├── [x] molecule.py
│   ├── [x] parallel.py
│   ├── [x] pickling.py
│   ├── plotting
│   │   ├── [x] __init__.py
│   │   ├── [x] barcode.py
│   │   ├── [x] complex3d.py
│   │   ├── network
│   │   │   ├── [x] __init__.py
│   │   │   └── [x] lignetwork.py
│   │   ├── [x] residues.py
│   │   └── [x] utils.py
│   ├── [x] rdkitmol.py
│   ├── [x] residue.py
│   ├── [x] typeshed.py
│   └── [x] utils.py
├── scripts
│   ├── [x] check_types.py
│   └── [x] test_build.py
└── tests
    ├── [x] __init__.py
    ├── [x] conftest.py
    ├── plotting
    │   ├── [x] __init__.py
    │   ├── [x] test_barcode.py
    │   ├── [x] test_complex3d.py
    │   ├── [x] test_network.py
    │   └── [x] test_residues.py
    ├── [x] test_constants.py
    ├── [x] test_fingerprint.py
    ├── [x] test_ifp.py
    ├── [x] test_interactions.py
    ├── [x] test_io.py
    ├── [x] test_molecule.py
    ├── [x] test_parallel.py
    ├── [x] test_pickling.py
    ├── [x] test_residues.py
    └── [x] test_utils.py

Summary: 51/51 files have complete type hints (100.0%)

Remaining errors

Poe => mypy .
Success: no issues found in 51 source files

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 95.98%. Comparing base (909cc9e) to head (431447b).

Additional details and impacted files

@@           Coverage Diff           @@
##           master     #356   +/-   ##
=======================================
  Coverage   95.98%   95.98%           
=======================================
  Files          29       29           
  Lines        2342     2342           
=======================================
  Hits         2248     2248           
  Misses         94       94           

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
• 📦 JS Bundle Analysis: Save yourself from yourself by tracking and limiting bundle sizes in JS merges.