Switch Poetry to uv (#101)

* chore: Switch to uv

* fix: Correctly call from uv scripts

* fix: Removed unused docs workflow, update test.yaml to uv

Author: reindervdw-cmi

.github/workflows/docs.yaml

@@ -11,19 +11,19 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v4
-    - name: Install poetry
-      run: pipx install poetry
+    - name: Install uv
+      run: pipx install uv
     - uses: actions/setup-python@v5
       with:
         python-version-file: pyproject.toml
-        cache: poetry
+        cache: pip
     - name: Install dependencies
       run: |
-        poetry install
+        uv sync
     - name: Run tests
       id: run-tests
       run: >
-        poetry run pytest \
+        uv run pytest \
           --junitxml=pytest.xml \
           --cov-report=term-missing:skip-covered \
           --cov-report=xml:coverage.xml \
@@ -46,6 +46,6 @@ jobs:
         with:
           python-version: "3.11"
       - run: |
-          pip install poetry
-          poetry install
-          poetry run mypy .
+          pip install uv
+          uv sync
+          uv run mypy .

.github/workflows/test.yaml

@@ -1,13 +1,11 @@
-FROM python:3.11-buster
+FROM ghcr.io/astral-sh/uv:python3.11-bookworm
 
 EXPOSE 8051
 
 WORKDIR /app
 
 COPY . .
 
-RUN pip install poetry && \
-    poetry config virtualenvs.create false && \
-    poetry install --only main
+RUN uv sync --no-dev
 
-CMD ["poetry", "run", "actigraphy", "/data"]
+CMD ["uv", "run", "--no-dev", "actigraphy", "/data"]

Dockerfile

@@ -107,19 +107,21 @@ The Actigraphy app is developed to annotate sleep data, and for this project, we
 
 That being said, the callback architecture has grown complex, especially in the graph component where chains of callbacks can cause the app to slow down.
 
-### Running the App through Poetry
+### Running the App through uv
 
-1. Ensure you have [Poetry](https://python-poetry.org/docs/) installed.
+Installation via `uv` is intended for developers; end-users should use the Docker installation described earlier.
+
+1. Ensure you have [uv](https://docs.astral.sh/uv/getting-started/installation/) installed.
 2. Clone the repository:
    ```bash
    git clone https://github.com/childmindresearch/app-actigraphy.git
    cd app-actigraphy
    ```
 3. Install dependencies:
    ```bash
-   poetry install
+   uv sync
    ```
 4. Run the app:
    ```bash
-   poetry run actigraphy {DATA_DIR}
+   uv run actigraphy {DATA_DIR}
    ```

README.md

@@ -1,49 +1,44 @@
-[tool.poetry]
-name = "actigraphy"
+[project]
+name = "actisleep-tracker"
 version = "0.1.0"
-description = "A beautiful description."
-authors = ["Reinder Vos de Wael <reinder.vosdewael@childmind.org>"]
-license = "LGPL-2.1"
+description = "Add your description here"
 readme = "README.md"
-packages = [{include = "actigraphy", from = "src"}]
-
-[tool.poetry.dependencies]
-python = "~3.11"
-dash-bootstrap-components = "^1.4.2"
-dash-daq = "^0.5.0"
-numpy = "^1.26.4"
-pandas = "^2.2.0"
-plotly = "^5.16.1"
-rdata = "^0.10"
-pydantic = "^2.6.1"
-dash = "^2.15.0"
-sqlalchemy = "^2.0.26"
-pydantic-settings = "^2.1.0"
-polars = "^0.20.7"
-pyarrow = "^15.0.0"
-
-[tool.poetry.group.dev.dependencies]
-pytest = "^8.0.2"
-mypy = "^1.8.0"
-pre-commit = "^3.6.2"
-pytest-cov = "^4.1.0"
-ruff = "^0.6"
-pytest-mock = "^3.12.0"
-vulture = "^2.11"
+requires-python = "~=3.11"
+dependencies = [
+    "dash~=2.15",
+    "dash-bootstrap-components>=1.7.1",
+    "dash-daq>=0.6.0",
+    "numpy>=2.3.0",
+    "pandas>=2.3.0",
+    "plotly>=6.1.2",
+    "polars>=1.30.0",
+    "pyarrow>=20.0.0",
+    "pydantic>=2.11.5",
+    "pydantic-settings>=2.9.1",
+    "rdata>=0.11.2",
+    "sqlalchemy>=2.0.41",
+]
 
-[tool.poetry.group.docs.dependencies]
-pdoc = "^14.4.0"
+[dependency-groups]
+dev = [
+    "mypy>=1.16.0",
+    "pre-commit>=4.2.0",
+    "pytest>=8.4.0",
+    "pytest-cov>=6.1.1",
+    "pytest-mock>=3.14.1",
+    "ruff>=0.11.13",
+    "vulture>=2.14",
+]
 
-[tool.poetry.extras]
-docs = ["pdoc"]
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
 
-[tool.poetry.scripts]
-actigraphy = "actigraphy.__main__:main_entrypoint"
-actigraphy_preprocess = 'actigraphy.__main__:preprocess_entrypoint'
+[project.scripts]
+actigraphy = "actigraphy.app:run_app"
 
-[build-system]
-requires = ["poetry-core>=1.2.0"]
-build-backend = "poetry.core.masonry.api"
+[tool.hatch.build.targets.wheel]
+packages = ["src/actigraphy"]
 
 [tool.pytest.ini_options]
 pythonpath = [

poetry.lock

@@ -55,6 +55,7 @@ def create_app() -> dash.Dash:
     return app
 
 
-if __name__ == "__main__":
+def run_app() -> None:
+    """Entrypoint for the application."""
     app = create_app()
-    app.run_server(debug=True)
+    app.run_server(debug=False)