Add C-PAC vs RBC comparison script

[nx10]

Adds scripts/compare_cpac_rbc.py, used to generate the validation report shared in the internal source code release email.

Compares 17 output pairs across anatomical, functional, metrics, and QC categories. Supports a --manifest flag to read pipeline test output paths from .last_run.json directly.

[github-actions]

Coverage Report

File	Stmts	Miss	Cover	Missing
src/rbc
__init__.py	1	0	100%
context.py	35	18	48%	68, 81–84, 115, 127–130, 134, 139–141, 143–144, 157–158
src/rbc/cli
__init__.py	8	0	100%
all.py	112	0	100%
anatomical.py	55	0	100%
base.py	33	0	100%
functional.py	67	0	100%
longitudinal.py	81	2	97%	197, 213
main.py	42	0	100%
metrics.py	75	0	100%
qc.py	67	0	100%
query.py	34	0	100%
src/rbc/core
__init__.py	3	0	100%
bids2table.py	52	31	40%	126, 132–136, 138–152, 154, 156, 158–160, 166–170
bids.py	505	0	100%
common.py	25	8	68%	62, 69–70, 82, 85–88
fileops.py	27	4	85%	69–72
nifti.py	192	5	97%	236–237, 244–245, 524
niwrap.py	32	0	100%
src/rbc/core/anatomical
__init__.py	4	0	100%
registration.py	14	4	71%	45, 137, 152, 167
segmentation.py	24	8	66%	61, 71–73, 89, 111, 122, 138
src/rbc/core/functional
__init__.py	13	0	100%
coregistration.py	7	2	71%	44, 55
despiking.py	7	0	100%
distortion.py	130	40	69%	269–271, 321, 324, 332–335, 341–346, 349, 352–353, 356, 365–369, 375–376, 387–388, 391, 397, 443–444, 447, 455, 461, 470–471, 474, 484, 491
initialization.py	9	1	88%	63
mask_utils.py	72	31	56%	55, 100, 105, 113, 129, 131, 133, 135–137, 139–142, 168, 170, 172, 174–177, 181–184, 188–192, 196
masking.py	34	25	26%	53, 55–56, 58–59, 62–65, 69, 91, 134, 183, 197, 208, 223, 233, 249, 258, 271, 285, 296, 306, 319, 328
motion.py	57	18	68%	65, 69, 124–125, 135–138, 159, 169, 171–172, 175, 177–179, 181, 183
nuisance.py	94	65	30%	87, 89–94, 96, 98–99, 102, 105–107, 109–111, 113–119, 121–125, 127, 164, 166, 168, 171–172, 174–176, 179–180, 182–183, 185, 188, 191–192, 195–197, 200–203, 207, 213–215, 217, 246, 254, 280, 289, 318, 327, 333
regressors.py	89	6	93%	148, 178, 308–311
resampling.py	37	31	16%	54–56, 58, 60–61, 65–66, 69–70, 82, 84–85, 121–123, 125, 127, 129–130, 135–137, 141–142, 145–146, 153, 165, 167–168
timing.py	16	0	100%
src/rbc/core/longitudinal
__init__.py	1	0	100%
transform.py	10	0	100%
src/rbc/core/metrics
__init__.py	3	0	100%
alff.py	92	1	98%	270
reho.py	66	0	100%
smoothing.py	7	3	57%	36, 42–43
standardization.py	27	11	59%	64, 66–68, 70, 72–75, 77–78
timeseries.py	57	1	98%	120
src/rbc/core/qc
__init__.py	6	0	100%
dvars.py	26	0	100%
motion.py	31	0	100%
registration.py	41	0	100%
xcp.py	41	0	100%
src/rbc/workflows
__init__.py	10	0	100%
anatomical.py	37	13	64%	68–73, 75, 135–138, 140–141
functional.py	66	35	46%	96–97, 105, 110–111, 119, 176, 179, 182, 185, 188, 191–193, 203–204, 214–215, 220, 223, 231, 238, 245, 252, 255–257, 260, 272, 284, 290, 299, 307–308, 312
metrics.py	31	10	67%	79, 84, 87–89, 92–94, 98, 100
qc.py	44	28	36%	80–81, 84, 87, 90–94, 97–99, 102, 111–113, 117–120, 122–125, 128, 145, 151, 153
src/rbc_resources
__init__.py	30	0	100%
TOTAL	2679	401	85%

Tests	Skipped	Failures	Errors	Time
696	0 💤	0 ❌	0 🔥	3m 51s ⏱️