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1 change: 1 addition & 0 deletions tests/data/.gitignore
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cpac_outputs
24 changes: 24 additions & 0 deletions tests/data/CPAC.md
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# C-PAC Test Comparison Run

Run C-PAC on the test dataset with minimal parallelization:

```sh
docker run --rm -it \
-v $(pwd)/tests/data/ds000001:/bids_input:ro \
-v $(pwd)/tests/data/cpac_outputs/ds000001:/outputs \
fcpindi/c-pac:release-v1.8.5.dev1 \
/bids_input /outputs participant \
--n_cpus 1 \
--num_ants_threads 1 \
--skip_bids_validator \
--preconfig rbc-options \
--save_working_dir
```

This mounts the BIDS dataset as read-only input and saves outputs and intermediates locally.

Clean up outputs:

```sh
rm -rf tests/data/cpac_outputs/ds000001/
```