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Bump the production-dependencies group across 1 directory with 5 updates#210

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Bump the production-dependencies group across 1 directory with 5 updates#210
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dependabot/pip/production-dependencies-70608f4d79

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@dependabot dependabot Bot commented on behalf of github Jun 1, 2025 •
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Bumps the production-dependencies group with 5 updates in the / directory:

Package From To
pyarrow 19.0.1 20.0.0
numpy 2.2.5 2.2.6
pydantic 2.11.4 2.11.5
scikit-digital-health 0.17.7 0.17.9
typer 0.15.4 0.16.0

Updates pyarrow from 19.0.1 to 20.0.0

Release notes

Sourced from pyarrow's releases.

Apache Arrow 20.0.0

Release Notes URL: https://arrow.apache.org/release/20.0.0.html

Apache Arrow 20.0.0 RC2

Release Notes: Release Candidate: 20.0.0 RC2

Apache Arrow 20.0.0 RC1

Release Notes: Release Candidate: 20.0.0 RC1

Apache Arrow 20.0.0 RC0

Release Notes: Release Candidate: 20.0.0 RC0

Commits

Updates numpy from 2.2.5 to 2.2.6

Release notes

Sourced from numpy's releases.

v2.2.6 (May 17, 2025)

NumPy 2.2.6 Release Notes

NumPy 2.2.6 is a patch release that fixes bugs found after the 2.2.5 release. It is a mix of typing fixes/improvements as well as the normal bug fixes and some CI maintenance.

This release supports Python versions 3.10-3.13.

Contributors

A total of 8 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Charles Harris
  • Ilhan Polat
  • Joren Hammudoglu
  • Marco Gorelli +
  • Matti Picus
  • Nathan Goldbaum
  • Peter Hawkins
  • Sayed Adel

Pull requests merged

A total of 11 pull requests were merged for this release.

  • #28778: MAINT: Prepare 2.2.x for further development
  • #28851: BLD: Update vendor-meson to fix module_feature conflicts arguments...
  • #28852: BUG: fix heap buffer overflow in np.strings.find
  • #28853: TYP: fix NDArray[floating] + float return type
  • #28864: BUG: fix stringdtype singleton thread safety
  • #28865: MAINT: use OpenBLAS 0.3.29
  • #28889: MAINT: from_dlpack thread safety fixes
  • #28913: TYP: Fix non-existent CanIndex annotation in ndarray.setfield
  • #28915: MAINT: Avoid dereferencing/strict aliasing warnings
  • #28916: BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate.
  • #28966: TYP: reject complex scalar types in ndarray.__ifloordiv__

Checksums

MD5

259343f056061f6eadb2f4b8999d06d4  numpy-2.2.6-cp310-cp310-macosx_10_9_x86_64.whl
16fa85488e149489ce7ee044d7b0d307  numpy-2.2.6-cp310-cp310-macosx_11_0_arm64.whl
f01b7aea9d2b76b1eeb49766e615d689  numpy-2.2.6-cp310-cp310-macosx_14_0_arm64.whl
f2ddc2b22517f6e31caa1372b12c2499  numpy-2.2.6-cp310-cp310-macosx_14_0_x86_64.whl
52190e22869884f0870eb3df7a283ca9  numpy-2.2.6-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl
8f382b9ca6770db600edd5ea2447a925  numpy-2.2.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
e604aae2ef6e01fb92ecc39aca0424d9  numpy-2.2.6-cp310-cp310-musllinux_1_2_aarch64.whl

... (truncated)

Commits
  • 2b686f6 Merge pull request #28980 from charris/prepare-2.2.6
  • ed41828 REL: Prepare for the NumPy 2.2.6 release [wheel build]
  • 83e4e7f Merge pull request #28966 from charris/backport-28958
  • 248f0cb TYP: add rejection-tests for complex ndarray floordiv
  • 5bad9da TYP: reject complex scalar types in ndarray.__ifloordiv__
  • 6c42775 Merge pull request #28915 from charris/backport-28892
  • 4277e7c Merge pull request #28916 from charris/backport-28898
  • bd1c863 BUG: Fix missing check for PyErr_Occurred() in _pyarray_correlate. (#28898)
  • 87d1d8a MAINT: Avoid dereferencing/strict aliasing warnings during complex casts in `...
  • 9e50659 Merge pull request #28913 from charris/backport-28908
  • Additional commits viewable in compare view

Updates pydantic from 2.11.4 to 2.11.5

Release notes

Sourced from pydantic's releases.

v2.11.5 2025-05-22

What's Changed

Fixes

Full Changelog: pydantic/pydantic@v2.11.4...v2.11.5

Changelog

Sourced from pydantic's changelog.

v2.11.5 (2025-05-22)

GitHub release

What's Changed

Fixes

Commits
  • 5e6d1dc Prepare release v2.11.5
  • 1b63218 Do not duplicate metadata on model rebuild (#11902)
  • 5aefad8 Do not delete mock validator/serializer in model_rebuild()
  • 8fbe658 Check if FieldInfo is complete after applying type variable map
  • 12b371a Update documentation about @dataclass_transform support
  • 3a6aef4 Fix missing link in documentation
  • 0506b9c Fix light/dark mode documentation toggle
  • 58078c8 Fix typo in documentation
  • See full diff in compare view

Updates scikit-digital-health from 0.17.7 to 0.17.9

Release notes

Sourced from scikit-digital-health's releases.

Version 0.17.9

Changes

  • Second potential fix for float precision cancellation when calculating moving SDev

Version 0.17.8

Changes

  • Trying fix for rolling SD calculation to address issue where consistent same values could result in accumulation of float precision errors resulting in negative variances/nan SD values

What's Changed

Full Changelog: pfizer-opensource/scikit-digital-health@0.17.7...0.17.8

Commits
  • 09d4050 Merge pull request #191 from pfizer-opensource/development
  • de16b3f Merge branch 'main' into development
  • b21030f version
  • 3616117 set any calculated sd to 0 if its negative
  • 019ced5 Merge pull request #190 from pfizer-opensource/development
  • 8e054dc version
  • 0eaa537 possible fix for accumulation of negative results when calculating rolling SD...
  • See full diff in compare view

Updates typer from 0.15.4 to 0.16.0

Release notes

Sourced from typer's releases.

0.16.0

Upgrades

When using the CliRunner with Click < 8.2, to be able to access the stderr output, you needed to set the mix_stderr parameter to True. Since Click 8.2 (and Typer 0.160 this release supporting it) this is no longer necessary, so this parameter has been removed.

Refactors

Internal

Changelog

Sourced from typer's changelog.

0.16.0

Upgrades

When using the CliRunner with Click < 8.2, to be able to access the stderr output, you needed to set the mix_stderr parameter to True. Since Click 8.2 (and Typer 0.160 this release supporting it) this is no longer necessary, so this parameter has been removed.

Refactors

Internal

Commits

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@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jun 1, 2025
@dependabot
Bump the production-dependencies group across 1 directory with 5 updates
8009419 
Bumps the production-dependencies group with 5 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [pyarrow](https://github.com/apache/arrow) | `19.0.1` | `20.0.0` |
| [numpy](https://github.com/numpy/numpy) | `2.2.5` | `2.2.6` |
| [pydantic](https://github.com/pydantic/pydantic) | `2.11.4` | `2.11.5` |
| [scikit-digital-health](https://github.com/pfizer-opensource/scikit-digital-health) | `0.17.7` | `0.17.9` |
| [typer](https://github.com/fastapi/typer) | `0.15.4` | `0.16.0` |



Updates `pyarrow` from 19.0.1 to 20.0.0
- [Release notes](https://github.com/apache/arrow/releases)
- [Commits](apache/arrow@apache-arrow-19.0.1...apache-arrow-20.0.0)

Updates `numpy` from 2.2.5 to 2.2.6
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v2.2.5...v2.2.6)

Updates `pydantic` from 2.11.4 to 2.11.5
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.11.4...v2.11.5)

Updates `scikit-digital-health` from 0.17.7 to 0.17.9
- [Release notes](https://github.com/pfizer-opensource/scikit-digital-health/releases)
- [Commits](pfizer-opensource/scikit-digital-health@0.17.7...0.17.9)

Updates `typer` from 0.15.4 to 0.16.0
- [Release notes](https://github.com/fastapi/typer/releases)
- [Changelog](https://github.com/fastapi/typer/blob/master/docs/release-notes.md)
- [Commits](fastapi/typer@0.15.4...0.16.0)

---
updated-dependencies:
- dependency-name: pyarrow
  dependency-version: 20.0.0
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: production-dependencies
- dependency-name: numpy
  dependency-version: 2.2.6
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
- dependency-name: pydantic
  dependency-version: 2.11.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
- dependency-name: scikit-digital-health
  dependency-version: 0.17.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: production-dependencies
- dependency-name: typer
  dependency-version: 0.16.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: production-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot force-pushed the dependabot/pip/production-dependencies-70608f4d79 branch from afb6919 to 8009419 Compare June 6, 2025 17:29
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dependabot Bot commented on behalf of github Jun 10, 2025

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Jun 10, 2025
@dependabot dependabot Bot deleted the dependabot/pip/production-dependencies-70608f4d79 branch June 10, 2025 15:49
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