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revtag

Install with bioconda Anaconda Version Build Status Coverage Status Language

Reverse (and complement) array-like SAM tags for negative facing alignments.

Waimea - Kauaʻi

Install with the Conda or Mamba package manager after setting your Bioconda channels:

❯ mamba install revtag

Example Usage

❯ revtag -i in.bam -o out.bam \
    --rev 'ad' 'ae' 'aq' 'bd' 'be' 'bq' 'cd' 'ce' \
    --revcomp 'ac' 'bc'

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Reverse (and complement) array-like SAM tags for negative facing alignments.

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