fix(sync): pull every path by default

[mattzcarey]

Workspace currently drops every node_modules path from normal backend pulls. The filtering default lives in the remote wsd server, so changing only a new host's local constant would not fix existing released container images.

This makes full synchronization explicit at the pull driver: pullOnce() sends ignore: [], overriding historical wsd defaults and including every path. The protocol's server default is also empty for new peers. Lower-level callers can still configure ServerOptions.ignore or call fetchChanges({ ignore }) directly when they intentionally want filtering.

The regression test records the request sent by pullOnce(), verifies its empty ignore list, and verifies both a normal file and a file under node_modules arrive with their contents. The Durable Object filesystem, RPC, Workspace, and repository-wide typecheck suites pass locally.

Agent-think will consume this pull request's preview package and use one complete synchronized VFS across model file tools and both bash backends.

[pkg-pr-new]

Open in StackBlitz

npm i https://pkg.pr.new/cloudflare/workspace/@cloudflare/workspace@17

commit: da8cd87

[mattzcarey]

Closing because agent-think does not need to change Workspace's historical node_modules pull behavior right now. This default is primarily relevant to Aron's Hackspace use case and can be revisited there when needed.