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@cobilab

Computational Biology Laboratory

A laboratory of the Information Systems and Processing (ISP) group at the University of Aveiro

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  1. cryfa cryfa Public

    A secure encryption tool for genomic data

    C++ 62 15

  2. falcon falcon Public

    A tool to infer metagenomic sample composition

    C 21 7

  3. geco3 geco3 Public

    An efficient DNA sequence compressor using Neural Networks

    C 14 8

  4. jarvis3 jarvis3 Public

    Efficient compression of biological data

    C 7

  5. altair altair Public

    AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data

    C 10

  6. alcor alcor Public

    Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data

    C 11 1

Repositories

Showing 10 of 36 repositories
  • spark Public

    This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.

    cobilab/spark’s past year of commit activity
    C 1 GPL-3.0 1 0 0 Updated May 8, 2025
  • ox Public

    A toolkit for sequence data analysis

    cobilab/ox’s past year of commit activity
    C 1 GPL-3.0 0 0 0 Updated May 7, 2025
  • mfcompress Public

    A compression tool specifically designed for FASTA and multi-FASTA files using finite-context models and arithmetic coding

    cobilab/mfcompress’s past year of commit activity
    C 1 0 0 0 Updated May 7, 2025
  • altair Public

    AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data

    cobilab/altair’s past year of commit activity
    C 10 GPL-3.0 0 0 0 Updated May 6, 2025
  • OptimJV3 Public

    Optimize compression parameters of Jarvis3

    cobilab/OptimJV3’s past year of commit activity
    Shell 1 GPL-3.0 0 0 0 Updated Apr 10, 2025
  • cobilab.github.io Public

    Cobilab website

    cobilab/cobilab.github.io’s past year of commit activity
    JavaScript 2 MIT 2 0 0 Updated Mar 26, 2025
  • magnet Public

    An ultra-fast and high-sensitive tool to filter specific DNA content

    cobilab/magnet’s past year of commit activity
    C 2 GPL-3.0 3 0 1 Updated Mar 5, 2025
  • CompressSequences Public

    How compressible are sequences?

    cobilab/CompressSequences’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Feb 19, 2025
  • cpm-fcm Public

    An encoder for biological sequences using Copy Models and Finite-context models

    cobilab/cpm-fcm’s past year of commit activity
    2 GPL-3.0 0 0 0 Updated Feb 10, 2025
  • jarvis3 Public

    Efficient compression of biological data

    cobilab/jarvis3’s past year of commit activity
    C 7 GPL-3.0 0 0 0 Updated Dec 18, 2024

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