Issues

• From post workshop survey 2026: More about the FAIR principles for research

  coderefinery/reproducible-research#292 · Filter by author samumantha opened on May 18, 2026

• From post workshop survey 2026: It would be nice to tell about how to construct a simple local package. Or a library

  coderefinery/reproducible-research#291 · Filter by author samumantha opened on May 18, 2026

• Add some of the Snakemake (on HPC) content from Snakemake hackathon 2024

  coderefinery/reproducible-research#290 · Filter by author samumantha opened on May 18, 2026

• Reproducible notebooks section

  coderefinery/reproducible-research#289 · Filter by author samumantha opened on May 8, 2026

• Field report, 2025 September

  coderefinery/reproducible-research#288 · Filter by author rkdarst opened on Feb 14, 2026

• Is instructor guide for this lesson clear and complete?

  coderefinery/reproducible-research#287 · Filter by author samumantha opened on Jan 30, 2026 · Spring workshop 2026

• Test whole lesson with latest versions

  coderefinery/reproducible-research#286 · Filter by author samumantha opened on Jan 30, 2026 · Spring workshop 2026

• Introduce conda with link to installation instructions, restructure??

  coderefinery/reproducible-research#285 · Filter by author samumantha opened on Jan 16, 2026

• Additional conda command

  coderefinery/reproducible-research#284 · Filter by author samumantha opened on Jan 16, 2026

• Demos need more thought as exercises

  coderefinery/reproducible-research#283 · Filter by author samumantha opened on Jan 16, 2026

• Field report, 2025 March

  coderefinery/reproducible-research#277 · Filter by author rkdarst opened on Apr 2, 2025

• Field report timings, 2024 September

  coderefinery/reproducible-research#275 · Filter by author rkdarst opened on Mar 24, 2025

• Add note on docker not being part of installation instructions

  coderefinery/reproducible-research#274 · Filter by author samumantha opened on Mar 17, 2025

• Snakemake: Focus more on why this is useful rather than details of snakemake?

  coderefinery/reproducible-research#271 · Filter by author samumantha opened on Mar 17, 2025
  1

• CodeRefinery derivatives at Netherlands eScience Center

  coderefinery/reproducible-research#266 · Filter by author svenvanderburg opened on Nov 15, 2024
  3

• Create CR reproducible project template?

  coderefinery/reproducible-research#258 · Filter by author samumantha opened on Mar 16, 2024

• Lessons learned from container workshop at RSEcon 2023

  coderefinery/reproducible-research#246 · Filter by author bast opened on Sep 6, 2023

• Try to give more practical focus

  coderefinery/reproducible-research#237 · Filter by author bast opened on Jul 19, 2023

• citation for Code Refinery?

  coderefinery/reproducible-research#234 · Filter by author EstherPlomp opened on Apr 11, 2023
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• Good resource about containers from CSC

  coderefinery/reproducible-research#213 · Filter by author bast opened on Mar 17, 2023
  4

• Comment on what happens with a 'standard' anaconda environment

  coderefinery/reproducible-research#247 · Filter by author rkdarst opened on Apr 2, 2022
  2

• Couple of interesting links

  coderefinery/reproducible-research#238 · Filter by author bast opened on Jan 19, 2022

• Lesson design: dedicated organization/workflowsection

  coderefinery/reproducible-research#75 · Filter by author rkdarst opened on Aug 11, 2019
  3

• Short lesson with repo2docker only for CodeRefinery workshop

  coderefinery/reproducible-research#153 · Filter by author annefou opened on Jun 6, 2019
  10