v0.8.15: Small fixes

• Fix warning when plotting
• Fix small issue in coherency checker

v0.8.14: MaBoSS Model Coherency Checker

Introducing MaBoSS Model Coherency Checker by ODufossez
Doc available here, and a tutorial example is available here.

Thanks Oscar!

v0.8.13: Support for TabularQual format

Introduce support for TabularQual format. Ex:

sim = maboss.loadTabularQual("https://github.com/sys-bio/TabularQual/raw/refs/heads/main/examples/Faure2006/Faure2006.xlsx")

Or with a local file:

sim = maboss.loadTabularQual("Faure2006.xlsx")

Note that the dependency is optional, so before doing this you'll have to manually install TabularQual using:

pip install tabularqual

v0.8.12: Node scheduling, improved windows support

• Node scheduling :
  model.network.set_schedule('Node', {t1: proba, t2: proba})
  model.network.get_schedule()

Full Changelog: v0.8.11...v0.8.12

0.8.11 Menu is back

• Follow colomoto-jupyter API changes for menu, and disable no longer working widgets

Full Changelog: v0.8.10...v0.8.11

v0.8.10: cMaBoSS update, PopMaBoSS update, new MaBoSS Installation script

• Extensive update of cMaBoSS (most properties are now editable !)
• New functionalities in PopMaBoSS (custom output, ...)
• New installation script (maboss_setup_experimental), windows compatible

v0.8.9: Observed graphs, improved PopMaBoSS support

• Added support for Observed State Transition Graphs, a new functionality introduced in MaBoSS 2.6.0
• Improved Lazy loading support for very large PopMaBoSS simulations

Initial PopMaBoSS support, update of cMaBoSS version

• Initial support of PopMaBoSS, using cmaboss or existing simulation files.
• Updated version of cMaBoSS (v1.0.0b24), which comes with numpy 2.0 support and memory improvements on linux
• pipelines.filter_sensitivity not using strict inequalities.
• added option to get last_* data as a series (as_series=True), for now defaulting to False.

Fix PyPI package, SBML import, updated cmaboss dependency

• Fix PyPI package (added missing description.rst, now also producing wheel)
• Fix SBML import (bug in counting the number of nodes)
• Updated cMaBoSS dependency to 1.0.0b21 (better error handling)

Improved documentation, added PyPi description, fix small bugs

• Fix nodes format limitations in initial states
• Fix tracking of mutations, avoiding multiple declarations of $nb_mutants
• Fix simulation of model loaded with cMaBoSS
• Added support for python 3.12
• Improved documentation
• Added long description for PyPi