v2.3.0

Release Notes

Main changes:

• bidspm main function:
  • error logs are generated upon crash for better bug reports
  • saving options are saved to help with bug report
  • can create default BIDS stats model
  • generate method section in reports folder when running preprocess or statistics
  • include bids and bids stats model validation if the validators are installed
• add inverse normalize workflow
• smoothing workflow will also try to smooth the corresponding anat data too
• lesion detection will be done by including the CSF TPM too

CHANGES

• [ENH] add design only to CLI #772
• [ENH] add smoothing for anat files
• [ENH] save skipped ROIs and concat beta maps (#823) @Remi-Gau
• [ENH] add boilerplate to CLI (#822) @Remi-Gau
• [ENH] add error.log (#808) @Remi-Gau
• [ENH] Use CLI to create default model (#804) @Remi-Gau
• [ENH] improve bids validation (#787) @Remi-Gau
• [ENH] add inverse normalize workflow (#784) @Remi-Gau
• [ENH] add csf tpm to lesion detection and update submodules (#778) @Remi-Gau

Fixes

• [FIX] fix printing of windows path (#812) @Remi-Gau
• [FIX] use glob patterns to define dummy contrasts (#826) @Remi-Gau
• [FIX] rm desc when renamining some files in lesion segemtation (#817) @Remi-Gau
• [FIX] avoid duplicate contrasts (#816) @Remi-Gau
• [FIX] make collecting of OS version on windows more robust (#806) @Remi-Gau
• [FIX] throw warning when no results are asked (#795) @Remi-Gau
• [FIX] fix windows bugs (#792) @Remi-Gau
• [FIX] fix spelling (#789) @Remi-Gau
• [FIX] fix and tidy failing workflows (#774) @Remi-Gau

Documentation

• [DOC] add Stefania Mattioni as contributor (#828) @Remi-Gau
• [DOC] add auto label of activation info (#821) @Remi-Gau
• [DOC] improve bids model warning (#820) @Remi-Gau
• [DOC] add all functions to doc (#819) @Remi-Gau
• [DOC] add Manon-56 as a contributor for bug (#807) @allcontributors

Maintenance

• [MNT] Test notebooks (#788) @Remi-Gau
• [MNT] improve docker, version, release handling (#785) @Remi-Gau
• [MNT] update submodules
• [MNT] improve doc generation and remove dead code (#790) @Remi-Gau
• [MNT] use github action to validate citation cff #771
• [MNT] update CI and fix tests #762