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Deprecating legacy API

Status: Open.

#705 In cytomining/pycytominer;

· axiomcura opened on Jun 5, 2026

FeatureRequest: Migrate Dependabot configuration to support uv

enhancementNew feature or requestNew feature or request

Status: Open.

#667 In cytomining/pycytominer;

· axiomcura opened on Apr 29, 2026

Question: How can we improve annotate by avoiding renaming of columns?

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#660 In cytomining/pycytominer;

· jenna-tomkinson opened on Apr 21, 2026

Remove temporary normalize() shim for string-encoded missing feature values

Status: Open.

Task

#646 In cytomining/pycytominer;

· d33bs opened on Apr 1, 2026

Enable CI docs environment to provision notebook dependencies

Status: Open.

Task

#645 In cytomining/pycytominer;

· d33bs opened on Apr 1, 2026

Issue: aggregate function uses different parameter name for profiles than the rest of the main functions

Status: Open.

#635 In cytomining/pycytominer;

· jenna-tomkinson opened on Mar 9, 2026

FeatureRequest: Faster Correlation Computation (Correlation Threshold Feature Selection)

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#633 In cytomining/pycytominer;

· MattsonCam opened on Mar 3, 2026

Address format_broad_cmap and clean_cellprofiler tight coupling

Status: Open.

Feature

#625 In cytomining/pycytominer;

· d33bs opened on Feb 13, 2026

Address automatic inference of output file type using filenames (CLI and core functions)

Status: Open.

Feature

#624 In cytomining/pycytominer;

· d33bs opened on Feb 13, 2026

Implement lazy file reader capabilities

Status: Open.

Feature

#576 In cytomining/pycytominer;

· d33bs opened on Sep 5, 2025

FeatureRequest: enable mulitple dataframe support

Status: Open.

Feature

#574 In cytomining/pycytominer;

· d33bs opened on Sep 2, 2025

FeatureRequest: Assigning what is metadata versus feature`

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#510 In cytomining/pycytominer;

· jenna-tomkinson opened on Feb 7, 2025