replace bash scripts with Hydra CLI#207
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mattersoflight wants to merge 2 commits intobiahub-uvfrom
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- Define both pipelines in parallel: hummingbird (widefield, linear) and mantis (light-sheet + label-free, 3 branches) - Include optical parameters, test data specs, and creation scripts - Reference ground truth datasets and mantis-analysis-template Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Follows #202
See plans/biahub-cli-refactor.md for details.