Replace create_empty_hcs_zarr with iohub's create_empty_plate#215
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tayllatheodoro wants to merge 3 commits intomainfrom
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Replace create_empty_hcs_zarr with iohub's create_empty_plate#215tayllatheodoro wants to merge 3 commits intomainfrom
tayllatheodoro wants to merge 3 commits intomainfrom
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Use iohub's built-in `create_empty_plate` utility instead of the local `create_empty_hcs_zarr` wrapper in stabilize.py. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
srivarra
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Mar 12, 2026
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I think we should go through and replace other instances of this function (I see a few extra places where this is used), and merge this after #214.
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| from biahub.cli.utils import ( | ||
| copy_n_paste_czyx, | ||
| create_empty_hcs_zarr, | ||
| estimate_resources, | ||
| process_single_position_v2, | ||
| yaml_to_model, | ||
| ) | ||
| from biahub.register import convert_transform_to_ants |
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Can we go through and remove create_empty_hcs_zarr across the package, and the function itself?
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i just did except the functions that call from waveorder because the metadata is different
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How is the metadata different? I'm not sure I'm following here.
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Summary
create_empty_hcs_zarrutility withcreate_empty_platefromiohub.ngff.utilsinstabilize.pycreate_empty_hcs_zarrfrombiahub.cli.utilsTest plan
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