Shared environment on HPC (Bruno)

Note

New users who do not need tracking and cluster visualization are advised to use ndutils-env instead.

A shared conda environment is maintained on Bruno, the Biohub's onsite HPC system.

Usage

Load modules:

ml anaconda comp_micro

Activate the environment:

conda activate napari-iohub

And launch napari:

napari

Then select plugins from napari's context menu.

Installed plugins

• napari-iohub
• napari-ome-zarr
• napari-animation
• napari-clusters-plotter

Issues

Issues can be reported in the issue tracker of this repository.