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LF only acquisition with Mantis hardware. #192

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Merged
jeskesen merged 29 commits into from
Jul 24, 2025
Merged

LF only acquisition with Mantis hardware. #192

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e3a3c19
initial MM generated config (for Windows)
jeskesen May 19, 2025
1e2b05f
Added slightly modified copy/paste of windows config for linux
jeskesen May 19, 2025
c007de0
Modify name of Oryx camera to "Oryx"
jeskesen May 19, 2025
1748131
WIP: allowing lightsheet to be disabled
jeskesen May 23, 2025
3802ef4
Revert "WIP: allowing lightsheet to be disabled"
jeskesen May 28, 2025
beca9c8
LF can run without LS
jeskesen May 28, 2025
de8fbc9
style fixes
jeskesen May 28, 2025
f01fbd3
small bugfixes
jeskesen May 28, 2025
ff4ab69
get correct ROI size for zarr output
jeskesen Jun 9, 2025
199e39a
for zarr output, remove channel dimension if <= 1
jeskesen Jun 9, 2025
32cb6b9
fix Oryx camera ID in getProperty query
jeskesen Jun 9, 2025
3995abe
ran black
jeskesen Jun 9, 2025
027a3c0
added checks to verify that acq engine is enabled
jeskesen Jun 10, 2025
7251e79
Ivan's changes to the example file for on-device development
tayllatheodoro Jun 17, 2025
dd95bab
Temporary edits to enable LF only
tayllatheodoro Jun 17, 2025
8851cff
On device hacks for debugging. revert later
tayllatheodoro Jun 20, 2025
566c4d9
MDA really only handles channel and slice. Remove position & time se…
tayllatheodoro Jun 20, 2025
215479a
Allow label-free config to be set on the command line. ran black.
jeskesen Jul 1, 2025
a1761d3
Calculate the slice acquisition rate for LF even if LS is disabled. …
jeskesen Jul 3, 2025
db07eb1
Fix logic in code which checks for light-sheet completion and aborts …
jeskesen Jul 3, 2025
899bd6e
Uncomment out acquisition & processing that happens inside the positi…
jeskesen Jul 9, 2025
9e531e1
removed squid configs... they should be in the configs repo
jeskesen Jul 9, 2025
73a52e1
Added DAQ sequencing back to acquisition. Frames are now being acquired
jeskesen Jul 12, 2025
efc7391
fixed callback which starts the DAQ for the sequenced acquisition
jeskesen Jul 14, 2025
34a4389
downgraded black to 22.3.0 on mantis (pymmcoreplus conda env), and re…
jeskesen Jul 15, 2025
2e53317
Ran flake8
jeskesen Jul 15, 2025
5f75e60
fixed abort-check logic
jeskesen Jul 15, 2025
a469e93
changed mm_config to ls_config
jeskesen Jul 24, 2025
03ea1f8
reverting example_acquisition_settings to pre-branch state
jeskesen Jul 24, 2025
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