v1.1

This release of shrimPy corresponds to the state of the acquisition engine at the end of 2025, before we rebuilt the microscope to collect label-free and fluorescence images through the same oblique detection path. This version of shrimPy uses a pycromanager-based acquisition engine, and includes a working implementation of autotracker on the mantis microscope.

In future releases we plan to transition to a pymmcore-plus-based acquisition engine, and update the repository structure to hold multiple acquisition engines (e.g. one for the mantis and iSIM microscopes) in one repository. Our intention is that these acquisition engines will share common features, possibly through a common base class, but may still contain differences specific to the hardware on each microscope.

v1.2rc0

Tagging a release candidate from Justin's work on transitioning the shrimpy acquisition engine to pymmcore-plus. This version supports simultaneous acquisition from the label-free and light-sheet arms of the microscope, and is only partially feature-complete. This code is archived and will not be developed further, please check newer releases.

v1.0

This release of shrimPy was used to collect and analyze data from the mantis microscope presented in our manuscript.

In future releases we plan to separate the data analysis module into an independent repository to facility reuse across multiple projects. We also plan to extend the acquisition engine to support data collection across multiple microscopes.