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Species Distribution Models in Python


See the tutorial link for details.


Examples of SDMs research outputs using Python

Probablistic near-current interpolation

  • Blending methods boosted model performances to ~ two-zero false negatives per species.
Coast redwood SDM geo-classification (Sequoia sempervirens) Standard deviations from multiple seeds/samples.
Giant sequioa SDM geo-classification (Sequoiadendron giganteum) Standard deviations from multiple seeds/samples.
Joshua tree SDM geo-classification (Yucca brevifolia) Standard deviations from multiple seeds/samples.

Requirements


Python dependencies are listed in a requirements-py.txt file, including the library version numbers. You can replicate the environment your codebase needs by using virtualenv:

# This creates the virtual environment
cd $PROJECT-PATH
virtualenv ensemble-climate-projections

Then install the dependencies by referring to the requirements-py.txt:

# This installs the modules
pip install -r requirements-py.txt

# This activates the virtual environment
source ensemble-climate-projections/bin/activate

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A brief Python tutorial for geospatial classification.

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