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fix(install): include agent metadata config in profile installs #279

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fix(install): include agent metadata config in profile installs #279

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513047f
fix(scripts): handle test runner flags correctly
darrenhinde Mar 16, 2026
1024c86
feat(context): add bibliography workflow contexts
darrenhinde Mar 16, 2026
f7a4c49
feat(commands): add bibliography workflow entrypoint
darrenhinde Mar 16, 2026
28f652a
feat(commands): add paper screening execution assets
darrenhinde Mar 16, 2026
d91ec94
feat(commands): add full-text review execution assets
darrenhinde Mar 16, 2026
3e8c73d
feat(commands): add literature decision execution assets
darrenhinde Mar 16, 2026
99f35ed
feat(commands): add section evidence pack assets
darrenhinde Mar 16, 2026
a212d21
feat(commands): add citation audit assets
darrenhinde Mar 16, 2026
1317875
docs: expose bibliography workflow commands
darrenhinde Mar 16, 2026
6181045
feat(tools): add bibliography workflow tooling contract
darrenhinde Mar 16, 2026
c3e738a
refactor(tools): bind bibliography workflow to local agentos stack
darrenhinde Mar 16, 2026
63f0437
feat(abilities): add bibliography control gates
darrenhinde Mar 16, 2026
a052c62
docs(abilities): map bibliography commands to runtime abilities
darrenhinde Mar 16, 2026
0de9073
feat(abilities): add bibliography command dispatcher
darrenhinde Mar 16, 2026
22bcffd
feat(control): implement unified event model as control layer foundation
darrenhinde Mar 16, 2026
19307a0
feat(control): implement model drift audit (v1.8) — audit-only detect…
darrenhinde Mar 16, 2026
19d03df
feat(control): generalize TaskType with configurable obligation defin…
darrenhinde Mar 16, 2026
380fd5f
fix(control): resolve 21 failing tests in plugin-abilities suite
darrenhinde Mar 17, 2026
dc84ba2
feat(control): integrate PermissionValidator into executor pipeline
darrenhinde Mar 17, 2026
b24a55e
refactor(control): archive legacy plugin.ts to src/_legacy/
darrenhinde Mar 17, 2026
65996ee
feat(bibliography): add artifact persistence, pipeline orchestration,…
darrenhinde Mar 17, 2026
cd0d8c6
feat(control): add executor robustness — timeout, retry, hooks, skill…
darrenhinde Mar 17, 2026
74b6485
docs: add bibliography control remediation plan
darrenhinde Mar 18, 2026
a441403
docs: add coding workflow control plan
darrenhinde Mar 18, 2026
9e9909a
feat(bibliography): enforce pipeline controls and auditable research …
darrenhinde Mar 18, 2026
489bbf0
feat(control): add code_change artifact contract and completion gates
darrenhinde Mar 18, 2026
e2ea885
feat(control): harden code-change workflow gates and WS5 decompositio…
darrenhinde Mar 18, 2026
a13839e
feat(control): add evidence-based completion contract for code_change
darrenhinde Mar 18, 2026
9536f2d
docs: add context compaction checkpoint mvp
darrenhinde Mar 18, 2026
a14a110
fix: ground bibliography workflow in runtime evidence
darrenhinde Mar 18, 2026
ba8234a
fix: parse zotero text previews in reading cards
darrenhinde Mar 18, 2026
376b100
feat: detect legacy bibliography artifacts
darrenhinde Mar 18, 2026
5bc712f
feat(plugin-abilities): add context compaction checkpoint runtime mvp
darrenhinde Mar 18, 2026
863b574
feat: ground bibliography planning in search evidence
darrenhinde Mar 18, 2026
5b1f2f6
fix: surface bibliography stage failures
darrenhinde Mar 18, 2026
818b299
test(plugin-abilities): cover runtime-driven checkpoint extraction
darrenhinde Mar 19, 2026
3f58fd7
fix: filter weak bibliography screening matches
darrenhinde Mar 19, 2026
9e17a00
fix(control): enforce code-change gates for primary workflow
darrenhinde Mar 19, 2026
d2c00b6
feat(plugin-abilities): wire conditional detail reinjection path
darrenhinde Mar 19, 2026
736a581
fix(context): improve objective topic resolution stability
darrenhinde Mar 19, 2026
4fefc4c
feat: drive bibliography search from planning
darrenhinde Mar 19, 2026
2a30b51
feat: surface bibliography search coverage warnings
darrenhinde Mar 19, 2026
568e6ed
fix: preserve thesis domain in bibliography search
darrenhinde Mar 19, 2026
e7f4e18
fix: scope bibliography downstream artifacts
darrenhinde Mar 19, 2026
5d4a908
feat(plugin-abilities): harden coding workflow execution
darrenhinde Mar 19, 2026
b3c5f13
feat: add agent-driven bibliography synthesis
darrenhinde Mar 19, 2026
219e95e
feat: wire bibliography collection and remote fulltext
darrenhinde Mar 19, 2026
5dbe6bd
fix: retry transient bibliography fulltext failures
darrenhinde Mar 20, 2026
94e3edc
fix: guard bibliography decisions with fresh reading cards
darrenhinde Mar 20, 2026
c43bf4e
feat: route ability agents through opencode sessions
darrenhinde Mar 20, 2026
d21a549
docs: add opencode bibliography runtime handoff
darrenhinde Mar 20, 2026
1c28714
feat(plugin): add copilot question proxy
darrenhinde Mar 20, 2026
5ea82de
feat(opencode): enable copilot-safe coding workflow tools
darrenhinde Mar 20, 2026
3757b29
docs(opencode): document copilot runtime tool names
darrenhinde Mar 20, 2026
c2d053d
docs(opencode): document planner handoff mode
darrenhinde Mar 20, 2026
7fdce13
feat(context): persist workflow checkpoints and plan context
darrenhinde Mar 20, 2026
41dcb49
docs: clean thesis bibliography evidence packs
darrenhinde Mar 20, 2026
312626f
docs: add thesis bibliography agent index
darrenhinde Mar 20, 2026
31bf186
feat(workflow): enable internal agent repair loop
darrenhinde Mar 20, 2026
ad8802e
feat(workflow): add commit stage to code-change
darrenhinde Mar 20, 2026
27d0d05
feat(plugin-abilities): capture coding workflow artifacts and runtime…
darrenhinde Mar 20, 2026
0da2655
fix(install): include agent metadata config in profile installs
Mar 21, 2026
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8 changes: 8 additions & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -227,3 +227,11 @@ tasks/
integrations/claude-code/converter/generated/
.cursorrules
bun.lock

# Local opencode runtime artifacts
.opencode/abilities/kb/
.opencode/bibliography-data/
.opencode/bibliography-runs/
.opencode/coding-data/
.opencode/context-checkpoints/
.opencode/control-logs/
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