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Idea: a `Stage` that's always rerun

#231

· vreuter opened

on Jan 17, 2025

how to deal with huge fastq files

#229

· zhangzhen opened

on Jul 23, 2024

`Pipeline` doesn't respect `-N` / `--new-start`

#228

· vreuter opened

on Jun 1, 2024

Could `-N` / `--new-start` be given an alias, like `--clobber` or `--overwrite`?

#227

· vreuter opened

on Jun 1, 2024

Pipeline "failure reason" loses some information

#226

· vreuter opened

on May 30, 2024

Setting the pipeline folder to a path that's not absolute causes problem for checkpointing

#225

· vreuter opened

on May 17, 2024

Rerun of downstream `Stage`s should be configurable, probably opt-in

#224

· vreuter opened

on May 8, 2024

Add summary of `Stage`s of `Pipeline` which failed

#221

· vreuter opened

on May 5, 2024

Idea: "describe" a pipeline

#217

· vreuter opened

on Apr 8, 2024

Running tests locally generates (or changes?) outputs that are not `.gitignore`d

#214

· vreuter opened

on Feb 18, 2024

Pipeline log file could collide with filepath given to logmuse

#212

· vreuter opened

on Feb 17, 2024

Critical bugs with reporting results

#209

· nsheff opened

on Feb 17, 2024