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2 changes: 1 addition & 1 deletion .github/ISSUE_TEMPLATE/config.yml
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@@ -1,5 +1,5 @@
blank_issues_enabled: false
contact_links:
- name: DataJoint Contribution Guideline
url: https://datajoint.com/docs/community/contribute/
url: https://docs.datajoint.com/about/contribute/
about: Please make sure to review the DataJoint Contribution Guidelines
2 changes: 1 addition & 1 deletion CONTRIBUTING.md
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@@ -1,5 +1,5 @@
# Contribution Guidelines

This project follows the
[DataJoint Contribution Guidelines](https://datajoint.com/docs/about/contribute/).
[DataJoint Contribution Guidelines](https://docs.datajoint.com/about/contribute/).
Please reference the link for more full details.
2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -48,7 +48,7 @@ environment and notebooks to learn the pipeline.

+ [Interactive tutorial on GitHub Codespaces](#interactive-tutorial)

+ [Documentation](https://datajoint.com/docs/elements/element-calcium-imaging)
+ [Documentation](https://docs.datajoint.com/elements/element-calcium-imaging/)

## Support

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2 changes: 1 addition & 1 deletion docs/mkdocs.yaml
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@@ -1,7 +1,7 @@
# ---------------------- PROJECT SPECIFIC ---------------------------

site_name: DataJoint Documentation
site_url: http://localhost/docs/elements/element-calcium-imaging
site_url: https://docs.datajoint.com/elements/element-calcium-imaging/
repo_url: https://github.com/datajoint/element-calcium-imaging
repo_name: datajoint/element-calcium-imaging
nav:
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2 changes: 1 addition & 1 deletion docs/src/.overrides/partials/nav.html
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Expand Up @@ -14,7 +14,7 @@
{#-
Add DataJoint home link to navigation header, otherwise unchanged
-#}
<a href="https://datajoint.com/docs/elements/" title="DataJoint Elements">
<a href="https://docs.datajoint.com/elements/" title="DataJoint Elements">
⬅ Home
</a>
</label>
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10 changes: 5 additions & 5 deletions docs/src/pipeline.md
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Expand Up @@ -27,7 +27,7 @@ The Element is composed of two main schemas, `scan` and `imaging`.

### `lab` schema

- For further details see the [lab schema API docs](https://datajoint.com/docs/elements/element-lab/latest/api/element_lab/lab/)
- For further details see the [lab schema API docs](https://docs.datajoint.com/elements/element-lab/latest/api/element_lab/lab/)

| Table | Description |
| --- | --- |
Expand All @@ -37,23 +37,23 @@ The Element is composed of two main schemas, `scan` and `imaging`.

- Although not required, most choose to connect the `Session` table to a `Subject` table.

- For further details see the [subject schema API docs](https://datajoint.com/docs/elements/element-animal/latest/api/element_animal/subject/)
- For further details see the [subject schema API docs](https://docs.datajoint.com/elements/element-animal/latest/api/element_animal/subject/)

| Table | Description |
| --- | --- |
| Subject | Basic information of the research subject |

### `session` schema

- For further details see the [session schema API docs](https://datajoint.com/docs/elements/element-session/latest/api/element_session/session_with_datetime/)
- For further details see the [session schema API docs](https://docs.datajoint.com/elements/element-session/latest/api/element_session/session_with_datetime/)

| Table | Description |
| --- | --- |
| Session | Unique experimental session identifier |

### `scan` schema

- For further details see the [scan schema API docs](https://datajoint.com/docs/elements/element-calcium-imaging/latest/api/element_calcium_imaging/scan/)
- For further details see the [scan schema API docs](https://docs.datajoint.com/elements/element-calcium-imaging/latest/api/element_calcium_imaging/scan/)

| Table | Description |
| --- | --- |
Expand All @@ -69,7 +69,7 @@ The Element is composed of two main schemas, `scan` and `imaging`.

### `imaging` schema

- For further details see the [imaging schema API docs](https://datajoint.com/docs/elements/element-calcium-imaging/latest/api/element_calcium_imaging/imaging/)
- For further details see the [imaging schema API docs](https://docs.datajoint.com/elements/element-calcium-imaging/latest/api/element_calcium_imaging/imaging/)

| Table | Description |
| --- | --- |
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2 changes: 1 addition & 1 deletion docs/src/tutorials/index.md
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Expand Up @@ -11,7 +11,7 @@
+ The Element Calcium Imaging described above can be modified for a user's specific experimental requirements and thereby used in active projects.

+ The GitHub Codespace and Dev Container is configured for tutorials and prototyping.
We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://datajoint.com/docs/elements/user-guide/) page.
We recommend users to configure a database specifically for production pipelines. Instructions for a local installation of the integrated development environment with a database can be found on the [User Guide](https://docs.datajoint.com/elements/user-guide/) page.

## Videos

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