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Cosmx: generating new flat files after proseg

Status: Open.

#135 In dcjones/proseg;

· jairaj-mathur opened on Dec 30, 2025

Xenium: Loading the default output zarr vs loading (proseg-to-baysor + xeniumranger import-segmentation)

Status: Open.

#134 In dcjones/proseg;

· jairaj-mathur opened on Dec 29, 2025

SpatialData input with points + shapes fails to use prior segmentation (--zarr-shape) in v3.0.12

Status: Open.

#133 In dcjones/proseg;

· kimdansay opened on Dec 22, 2025

Can the program produce fake data using the simulator

Status: Open.

#132 In dcjones/proseg;

· hanbin973 opened on Dec 19, 2025

Proseg cannot output results even after convergence (MERSCOPE)

Status: Open.

#129 In dcjones/proseg;

· Finley-Maple opened on Dec 5, 2025

Choosing number of voxels for expansion with Visium HD

Status: Open.

#128 In dcjones/proseg;

· Demond-dev opened on Dec 1, 2025

Using filtered matrix with Proseg

Status: Open.

#127 In dcjones/proseg;

· jairaj-mathur opened on Dec 1, 2025

Diffusion Correction Benchmarking

Status: Open.

#124 In dcjones/proseg;

· DarioS opened on Oct 28, 2025

Proseg cosmx is taking more than 12 hours (and counting)

Status: Open.

#123 In dcjones/proseg;

· jai-mathur opened on Oct 21, 2025

proseg v3.0.10 VisiumHD error reading the spaceranger output

Status: Open.

#122 In dcjones/proseg;

· LauritzMia opened on Oct 20, 2025

Proseg with openst

Status: Open.

#121 In dcjones/proseg;

· yoavnahum21 opened on Oct 16, 2025

Visium HD proseg error "ScaleTooSmall"

Status: Open.

#120 In dcjones/proseg;

· rachelgriffard opened on Oct 14, 2025