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Updates to oncotree parser and fix to oncotree_mapping bug#16

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ovalle15 wants to merge 1 commit intodfci:masterfrom
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Updates to oncotree parser and fix to oncotree_mapping bug#16
ovalle15 wants to merge 1 commit intodfci:masterfrom
ovalle15:master

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@ovalle15 ovalle15 commented Apr 4, 2022

  • Updates to column labels.
  • Updated how we handle logic around different types of liquid tumor parent nodes
  • Added logic to add 'No Oncotree Node Found' when parsing the text file
  • Fixed bug that included "LIQUID" node to the "SOLID" node.

Note that the differences between the old oncotree_mapping and newly generated oncotree_mapping are differences in order and not in content. The only true difference is the removal of "LIQUID" from the "SOLID" node.

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