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[DEVEX-2597] [Nextflow] Parsing nextflow_schema.json does not support arrays of strings for the 'type' attribute #1509

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[DEVEX-2597] [Nextflow] Parsing nextflow_schema.json does not support arrays of strings for the 'type' attribute #1509

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5 changes: 5 additions & 0 deletions src/python/dxpy/nextflow/nextflow_builder.py
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Original file line number Diff line number Diff line change
Expand Up @@ -172,6 +172,11 @@ def get_dx_type(nf_type, nf_format=None):
}
if nf_type == "string" and nf_format in str_types:
return str_types[nf_format]
elif isinstance(nf_type, list):
print(f'TEST: nf_type is: {nf_type}')
type_array = [get_dx_type(t) for t in nf_type if t != "null"]
print(f'TEST: type_array is: {type_array}')
return type_array[0] if len(type_array) == 1 else type_array
elif nf_type in types:
return types[nf_type]
raise Exception("type {} is not supported by DNAnexus".format(nf_type))
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