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Try to fix Julia & spark #122

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Merged
Tmonster merged 2 commits into from
Jun 3, 2025
Merged

Try to fix Julia & spark #122

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4f11202
unset LD_LIBRARY_PATH
Tmonster Jun 3, 2025
2e57d0e
also fix spark
Tmonster Jun 3, 2025
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2 changes: 2 additions & 0 deletions _launcher/launcher.R
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Expand Up @@ -160,6 +160,8 @@ launch = function(dt, mockup, out_dir="out") {
uniqueN(dt$nodename)==1L, # this should be single value of current nodename
!anyNA(dt$solution), !anyNA(dt$task), !anyNA(dt$data)
)
# unset LD_LIBRARY_PATH for julia see https://github.com/JuliaLang/julia/issues/55765#issuecomment-2641247134
Sys.setenv(LD_LIBRARY_PATH="")
machine_type = Sys.getenv("MACHINE_TYPE")
stopifnot(is.character(machine_type))
batch = Sys.getenv("BATCH", NA)
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2 changes: 1 addition & 1 deletion _setup_utils/setup_small.sh
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Expand Up @@ -11,7 +11,7 @@ sudo apt-get -qq install make

sudo apt-get -qq install wget curl openssl build-essential
sudo apt-get -qq install -y r-base-dev virtualenv
sudo apt-get -qq install openjdk-8-jdk
sudo apt-get -qq install openjdk-17-jdk

sudo apt-get install -y zlib1g-dev
sudo apt-get install -y pandoc unzip
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2 changes: 1 addition & 1 deletion spark/setup-spark.sh
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Expand Up @@ -8,7 +8,7 @@ virtualenv spark/py-spark --python=python3


# put to paths
echo 'export JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64' >> path.env
echo 'export JAVA_HOME=/usr/lib/jvm/java-17-openjdk-amd64' >> path.env

source path.env

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